Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4030g00009 ATGGGAGGCTTATTGCACATGTTTGAGTTCAATCAGGGCAGGATGGCCAAGAAAATTCATGCTCATAAGAACAATAACGATGATATGGAAACATCTGGAAATGGCATGAAGCTGCAAGTAGAAACCTCTCAGGTCCACTGTGCAGAAGGAGAATTACAATACTCCTGTCAAGTAGAAGATGGGTGGTCAAAGAAAATTAGTCACTCAAATGTGGATTCAGTGAAAAAAGCGAACAAAGAGGGTTTTTCCAAACAATCAGGCGCCAGAAGTAATGCCCCTAGCCTTGTGGCAAGGTTGATGGGGATAGACACCATGCCTTTACCATTAGACACTAAATCTGTCGTTCCATTGGACGAAAGCACACATGAAAATATGGAGAGGAAGTTTTCAAAGAAGAAAATGAATGGAAAAGGTTGGTTTGGTAGGGGTTCTTCAAACTTGAATTCTTTTAGCCATATGGAATTTGATTCATTTTATCAGCACATCGATGATGATGATGAAGATGATGAAGGTGGACATAGTTTTGGAGAACCGGAGCCAAGGGAACATCCTCAAGAAGAGGAACTCCAAAAATTCAAGAAAGAATTTGAAGAGTATCAATCAACAAGGTTTAAGGAGTGGCCGAAGGCTGTTGACATCGGAAGTGGTTCTAGGAGAATGCTTTCGCTTTCTCAAGAGAACCTGAGCAAGGAGAGCATGCAACATATTTCGAGTTCAAAGACAGATAGCCACTCATTTAAGAAAAAAGAATCCTTTCCATCAAGAAGTAAAACACAAAGTAGGGACTTTGAGGAGTCTTTAATGATGAAATCCAAAAGCAGATTATTAGATATATGCACTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTTCTGAAAGGATTTGCAATTGCAACCATGAAGAGAACTTCACAAGTTTACATAGGAGAAAAGGTATAGAAGATTTTCTTGAGGAAGTGAGAGAGCGCTTGAAGTGTGAACTCCAAGGGATTAGAGCCAGTGGAATCGAGACACCTTTCAATGATAAATCTGTTGCTAAAGAGGTCAGAGAAAGTATGACTAGAGATGCTGAACCTAATTTACTGCGCTCAGAATCAACGAGATCATACAAAAGTAAAATGCAGCTCAACGGACAAAGTTCCCCAGAATTTTTCAACATAGATACTAGGAGGTTCTTGTCAGAGAGGCTAAGAAATACTGTAAAAAATGAATTGCATTTGGACATTCCTGAAGTGGCTTGTTATTTAGAGAATGACAGAGTTAGACTAAAGCAAGATACTATAAAGGGTACAGATGACAAGAGCCAGTGGGGAGTTCTAAAAGAGAAAAAAGAATTACAAACATGTTCCAATAGACATAAATTAGATGACAACGTATTGCTCCACAAGGAGTTGTCACCTAGGAACCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAGCATTATTTGGAAGGCTTCTTTTGGAGGACCGCCACATTTTAACGGGTGCCCTTATTCAGAGGAAGCTTGAAGCGGTTGAAGCAAGGCCTGTGGGTGCTAAAAAACAGAAGAAAGATGGATTTAATATTAAAGAAAAACTTTCCAATTTTAAATATACTCTTGGTCTAAGAGGGAAGCTGTTTGGCAAAAGGATTAAGTCAAAAGTAGAATCACATGGCACCGAATATGGTGAAATTTTGAGAGATGCCAGGAGTGGACCAACTATTCTCATGAAACATGGTGACAGACATGAGAACTCCACCGAGGTACCTCCTAGTCCTGCATCTGTGAGCAGCTGTGCTGATGAAGAACATTGGAGACAGATTGGGTATTCAAGTTTAACATCAACTCCAGATGCATCTTCATTAGATGATATTTTTGTTCCCAAGGTTTTTAGAGATATCAGCTCTGGTTTGAACGACCTAAAGAGGCAACTCAGTGAGCTTGATTCCGATGGCTATGATGATTTCACTACAAAGCAGGAACCGATTGAGTCTTCATTAGTTGAATTGGATGATCCAGCAGAATCTTATGTAAGAGATCTGCTTGTTGCCTCTGGTTTGTACTTTGGTTCATGGGATAAATATATTGGCAACTCAGTTTTTGAAGAAGTGGAAGAATCTCATAGGAAATTGGTGAAGGAGGATGAAAGATCCAGAAAATATCATAACAAGAATAAGTTAGAGCACAAGGTTTTGCTTGATTTGTTAAATGAGGCACTTTCTATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAACTAAGCAAATCCTCCTTGCAGCCTCCACCATGTGGAAAGGAACTGCTAAAGTTAGTATGGGACATTGTCCGTGTTTCTTTACATCCAACCTCTAACACATCTCTTTATTCAGTTGACAGTTTTTTGGCACAAGATCTAGGATCTATTTCCTGGTCTGGGCTAACAAACGATGAGATTGATACATTGGAAAGAGAGACTGCATGTACAATCGCCGATGATTTGGTTGAAGAATTCACAAAGGATATGCTCTTGTAG 2505 0.3976 MGGLLHMFEFNQGRMAKKIHAHKNNNDDMETSGNGMKLQVETSQVHCAEGELQYSCQVEDGWSKKISHSNVDSVKKANKEGFSKQSGARSNAPSLVARLMGIDTMPLPLDTKSVVPLDESTHENMERKFSKKKMNGKGWFGRGSSNLNSFSHMEFDSFYQHIDDDDEDDEGGHSFGEPEPREHPQEEELQKFKKEFEEYQSTRFKEWPKAVDIGSGSRRMLSLSQENLSKESMQHISSSKTDSHSFKKKESFPSRSKTQSRDFEESLMMKSKSRLLDICTSPTQIVILKPGSERICNCNHEENFTSLHRRKGIEDFLEEVRERLKCELQGIRASGIETPFNDKSVAKEVRESMTRDAEPNLLRSESTRSYKSKMQLNGQSSPEFFNIDTRRFLSERLRNTVKNELHLDIPEVACYLENDRVRLKQDTIKGTDDKSQWGVLKEKKELQTCSNRHKLDDNVLLHKELSPRNLERSLSAPASGALFGRLLLEDRHILTGALIQRKLEAVEARPVGAKKQKKDGFNIKEKLSNFKYTLGLRGKLFGKRIKSKVESHGTEYGEILRDARSGPTILMKHGDRHENSTEVPPSPASVSSCADEEHWRQIGYSSLTSTPDASSLDDIFVPKVFRDISSGLNDLKRQLSELDSDGYDDFTTKQEPIESSLVELDDPAESYVRDLLVASGLYFGSWDKYIGNSVFEEVEESHRKLVKEDERSRKYHNKNKLEHKVLLDLLNEALSIVLGPPLTLSRFRRKLSKSSLQPPPCGKELLKLVWDIVRVSLHPTSNTSLYSVDSFLAQDLGSISWSGLTNDEIDTLERETACTIADDLVEEFTKDMLL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4030g00009 834 MobiDBLite consensus disorder prediction 174 188 - -
Vium4030g00009 834 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
Vium4030g00009 834 MobiDBLite consensus disorder prediction 241 263 - -
Vium4030g00009 834 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 833 - -
Vium4030g00009 834 MobiDBLite consensus disorder prediction 162 188 - -
Vium4030g00009 834 MobiDBLite consensus disorder prediction 351 375 - -
Vium4030g00009 834 MobiDBLite consensus disorder prediction 227 263 - -
Vium4030g00009 834 Pfam Domain of unknown function (DUF4378) 670 827 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4030g00009 Vium-Chr4030 76011 80514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4030g00009 74 832 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 36.273 2.72e-121 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4030g00009 - - gmx:100810825 1255.74