Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4030g00004 ATGTCGTGTTCTTCTTCATCCGGGTCTGAAGAGGACGATGAGGTGTTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGCCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGCATATGTTGCTCTTAAGATCCAGAAAAGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGTGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGCCAGCACCTTTGCATGGTGATTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCCATTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATCTCTACCATTGATCCTGCCAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTAGAGAGGCCAGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCGCTGGAAGAACAGCTTCAATTGGAGGAATAGAAGATCAAAAGTCTGTGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGAATTCGAAGACTAAAGTTTTGGCCCCTTAGCAAATTGTTGGTTGATAGATACAAATTTCCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTCGATTTCGTCCCAGAGAAGCGACCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAAGGAATCCAGTGTGGAGAATGTGGGTGTTGGGATGAGCAATCTCAAAATCAAGGGGGCAAAGTGA 1326 0.4465 MSCSSSSGSEEDDEVFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSAYVALKIQKSAAQFVQAALHEIDVLASISDGVDVNSKCVVQLIDHFKHAGPNGQHLCMVIEFLGDSLLRLIKYNRYKGLPLNKVREICHCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKDPVKSEVSPILERPEGSINGGVTSLIEKKLKRRARRAVAKIAGRTASIGGIEDQKSVRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLVDRYKFPQSDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLRGTESNEKKESSVENVGVGMSNLKIKGAK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4030g00004 441 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Vium4030g00004 441 FunFam Protein kinase superfamily protein 24 123 - -
Vium4030g00004 441 FunFam Serine/threonine-protein kinase SRPK 116 412 - -
Vium4030g00004 441 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 239 424 - -
Vium4030g00004 441 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00004 441 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00004 441 CDD STKc_SRPK 27 412 - -
Vium4030g00004 441 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vium4030g00004 441 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00004 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vium4030g00004 441 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Vium4030g00004 441 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vium4030g00004 441 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4030g00004 Vium-Chr4030 17135 21505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4030g00004 4 427 EF-hand Containing Proteins AT5G22840 51.255 7.19e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium4030g00004 Pkinase 6.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4030g00004 K08832 - gmx:100811724 764.992