Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4030g00003 ATGTCGTGTTCTTCTTCATCCGGGTCTGAAGAGGACGATGAGGTGTTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGCCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGTATGTTATTTTTGTTGTTTGGGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGTGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGCCAGCACCTTTGCATGGTGATTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCCATTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATCTCTACCATTGATCCTGCCAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTAGAGAGGCCAGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCGCTGGAAGAACAGCTTCAATTGGAGGAATAGAAGATCAAAAGTCTGTGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGAATTCGAAGACTAAAGTTTTGGCCCCTTAGCAAATTGTTGGTTGATAGATACAAATTTCCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTCGATTTCGTCCCAGAGAAGCGACCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAAGGAATCCAGTGTGGAGAATGTGGGTGTTGGGATGAGCAATCTCAAAATCAAGGGGGCAAAGTGA 1320 0.4455 MSCSSSSGSEEDDEVFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSVCYFCCLGAAQFVQAALHEIDVLASISDGVDVNSKCVVQLIDHFKHAGPNGQHLCMVIEFLGDSLLRLIKYNRYKGLPLNKVREICHCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKDPVKSEVSPILERPEGSINGGVTSLIEKKLKRRARRAVAKIAGRTASIGGIEDQKSVRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLVDRYKFPQSDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLRGTESNEKKESSVENVGVGMSNLKIKGAK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4030g00003 439 Gene3D Transferase(Phosphotransferase) domain 1 90 410 - -
Vium4030g00003 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vium4030g00003 439 SUPERFAMILY Protein kinase-like (PK-like) 32 414 IPR011009 -
Vium4030g00003 439 SMART serkin_6 38 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00003 439 FunFam Serine/threonine-protein kinase SRPK 114 410 - -
Vium4030g00003 439 Gene3D Phosphorylase Kinase; domain 1 24 121 - -
Vium4030g00003 439 Pfam Protein kinase domain 39 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00003 439 Pfam Protein kinase domain 249 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00003 439 ProSiteProfiles Protein kinase domain profile. 38 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4030g00003 439 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 237 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4030g00003 Vium-Chr4030 17135 21510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4030g00003 4 425 EF-hand Containing Proteins AT5G22840 49.582 2.43e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium4030g00003 Pkinase 6.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4030g00003 K08832 - gmx:100811724 739.954