Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4030g00002 ATGACAAAGATTTTGCTTCTTGTTCTCCTCATCTTCTACCATGCCTTCCCTTCAAAGGGAATCAGCAGTGTATCTACAAGACCAACAACTGTTAACGTAGGCGCTCTCATGTCCTTCAATTCAACAGTTGGGAGAGTGGCTAAGGTTGCTATACAAGCTGCAGTGGATGATGTAAACTCAGATGTTACTATTCTTAATGGAATTGAGTTAAAGATTTTAATGTTGGACACCAAATTATCCACTGGGTTCCTGGGAATTGTTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCCGTGATGGCTCATGTGATTTCACACATTGCAAATGAGATGCAAGTGCCTCTCCTATCATTTGCAGCCACGGACCCTACACTCACTTCACTGCAGTTCCCATATTTTGTTCGGACAACGCAGAGTGATCTGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCCGCTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCACCACTTAAGCCTGGTAACATTACTCGGGAAGATATAAACAGTGCATTAGTTAAGATAGCTCTAATGGAATCCAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTAGATGTGTTGAATGTGGCTCGTTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCTCAGATTGGCTTTCTACATTATTAGATTCAAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTCATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTAGTTCTAGCTGGAACAAAGTGAGCAAGGAAAAGGATCCTGCTGGCGGTCCTTTCGCATTGAACACCTTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCCGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAGAATTCTAGAGGTGAACAGAAGTGGTCTAACAGGGCAAATGATGTTTGGACAAGACGGAAACTTGGTGCATTCATCATACGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTACGGTGTCATCTGGCCTGGTCAAACGACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACCGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCTTATCCCGTTCCCTACAAGTATTTTTCATTTGGAGATGGTAAAACGAACCCACCAAATGCAAAACTTCTCAACAAGATCACTATTGGGGAGTTCGATGCAGTTGTGGGGGACATTACCATTACCACAAACAGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCGGGGCTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTATGGATTCTGGAACGTCGCTTAAATGATGACTTCAGAGGCCCAGCTAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATCGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGCCTCACCTCCATCCTAACTGTGGAACAGCTCTCATCCTCAGTTAAGGGAATTGAAAGCTTAGCAACAAGCGATGAACGGATTGGTTTCCTCAGTGGCTCCTTTGCTGAAAATTATCTGACAGAGGAGCTGAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAGGCCTTGAAAGATGGTCCTGCCAACGGAGGTGTCACTGCCATAATAGATGAACGTGCATACATGGAACTCTTCCTGGCTACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGAGACTCTCCCTTGGCAATTGACATGTCAACTGCCATCTTAAAACTTTCGGAGAATGGTGATCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGTAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAACAAGCTTTTGGGGTCTGTTCCTACTTAGTGGAATAGCATGCTTCGTTGCTCTTCTTTGCTATGTTGATAAATGTTCATAA 2559 0.4342 MTKILLLVLLIFYHAFPSKGISSVSTRPTTVNVGALMSFNSTVGRVAKVAIQAAVDDVNSDVTILNGIELKILMLDTKLSTGFLGIVDSLRLMENDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSALGDKLAEKRGKISHKAPLKPGNITREDINSALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMGSGYVWIASDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESEIKRKFSSSWNKVSKEKDPAGGPFALNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDSMGVFLDGEKLLKRILEVNRSGLTGQMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYPVPYKYFSFGDGKTNPPNAKLLNKITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSDERIGFLSGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELTSFWGLFLLSGIACFVALLCYVDKCS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4030g00002 852 FunFam Glutamate receptor 578 708 - -
Vium4030g00002 852 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Vium4030g00002 852 PIRSF IGluLR_plant 1 851 IPR017103 -
Vium4030g00002 852 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Vium4030g00002 852 Pfam Bacterial extracellular solute-binding proteins, family 3 524 808 IPR001638 -
Vium4030g00002 852 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Vium4030g00002 852 FunFam Glutamate receptor 704 811 - -
Vium4030g00002 852 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Vium4030g00002 852 Gene3D - 147 427 - -
Vium4030g00002 852 FunFam Glutamate receptor 462 578 - -
Vium4030g00002 852 FunFam Glutamate receptor 147 307 - -
Vium4030g00002 852 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Vium4030g00002 852 Gene3D - 467 577 - -
Vium4030g00002 852 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 848 IPR015683 -
Vium4030g00002 852 Gene3D - 724 814 - -
Vium4030g00002 852 Gene3D - 578 712 - -
Vium4030g00002 852 CDD GluR_Plant 465 807 - -
Vium4030g00002 852 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Vium4030g00002 852 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Vium4030g00002 852 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Vium4030g00002 852 Gene3D - 49 402 - -
Vium4030g00002 852 SUPERFAMILY Periplasmic binding protein-like II 443 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4030g00002 Vium-Chr4030 7776 11592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4030g00002 12 847 Ion Channels AT1G42540 59.364 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4030g00002 K05387 - gmx:100790502 1536.16