Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4025g00001 ATGGAGGAATTGGATTCAATACCAAAGACTCTGATGGAAAATCTGCTTGGTCTTTTGAGGGTTCGCGTGAAGCGTGGTATCAACCTTGCCGTTCGTGATGTCCGAAGTAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTGTCATTAAAAAGGATGTGAATCCGGAGTGGAATGAAGACCTTACACTTTCTATTATAGATCCGAATCACCAAGTTAAACTGACTGTGTATGATCATGACACCTTCAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACTTAAGTGGCATTCCAAATGGAACTGTGATAAAAAGAATACAACCAAGCAGGGAGAACTTCCTGGCTGATGAGAGCTGCATCACTTTTGCCAATGGCAAGGTTGTGCAAGATATGATCCTTAGATTGCAGAATGTGGAATGTGGTGAAGTTGAAATTCAGTTGCAGTGGATTGATCTTCCTGGTGCTAAGGGTATAGCTAAGGGTACATGA 543 0.418 MEELDSIPKTLMENLLGLLRVRVKRGINLAVRDVRSSDPYVVIKMFNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHQVKLTVYDHDTFSKDDRMGDAEFDIFPFIEALKSNLSGIPNGTVIKRIQPSRENFLADESCITFANGKVVQDMILRLQNVECGEVEIQLQWIDLPGAKGIAKGT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4025g00001 180 Gene3D C2 domain 13 175 IPR035892 -
Vium4025g00001 180 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Vium4025g00001 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Vium4025g00001 180 Pfam C2 domain 17 101 IPR000008 -
Vium4025g00001 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
Vium4025g00001 180 CDD C2_ArfGAP 16 159 - -
Vium4025g00001 180 SMART C2_3c 18 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4025g00001 Vium-Chr4025 820 2689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4025g00001 49 178 C2H2 Transcription Factor Family AT1G70790 59.091 4.46e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4025g00001 - - gmx:100810504 319.316