Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4020g00002 ATGGCTTCCTCAATCTTACTCTTTCTTTTCCTACAATTCTTCTCTCTGCACACTTCACATTCTGCATTTTCATCACTCACCACGGACTCATCCCTCTCGGTAGAGAAACCCGACGACGTTATTCTCTCCCCAAACGGCGTTTTCTCCGCCGGCTTCGTTGCCGTCGGTGAAAACGCCTACTCTTTCGCCGTATGCTTCACACAAACCGGTTCCCACAACCACCCCACAATCGTGTGGATGGCGAACCGGGAGAACCCCGTCAACGGAAAACGTTCCAAACTCTCTCTCTCAGGAGCCGGTAACCTTGTCTTGGATGATGCTGCTCAACGAACGGTGTGGTCTTCGAACACTGCTTCGTTGGCTTCACCACTGTTGCATCTCAGAGACGATGGCAATCTCGTGTTGCGTGACCTCCAAGGAACCGTTCTGTGGCAAAGCTTTGATTTTCCCACCGATACTCTTCTTCCGGGACAACCCCTCACCAGACGCACGCAACTCGTGTCTGCAAGAAGCGACACTAACCATTCCTCCGGTTTCTACAAGCTCTTCTTCGACGATGACAACGTTCTTCGTCTTCTCTTCGATGGCCCTGATGTTTCCAGCGTTTACTGGCCATATCCATGGTTGGTGAGTTGGGACGCTGGAAGGTCTACTTACAATAGCAGTAGATCGGCAGTAATGGACTCACTCGGAAGATTCATTTCAACTGATAGTTTTACTTTTATTACATCTGATTATGGCGCTATGAAGCAAAGAAGATTGAAACTTGATTCTGATGGTAACCTTAGAGTGTATACACTGCATGATGGATGGTTTGTTTCGTGGCAAGCGAGAGGTGACCCTTGCAATATCCACGGGATTTGTGGACCTAACAGTGCGTGCAGTAATGATCATGAGCATGGAAGGAAGTGCTCGTGTCTTCCGGGACATAGAATCAAGAACCATAGCGATTGGTCTTATGGCTGTGAACCTGTGTTCGTTTTGTCTTGCAACAGAAGTGAGTCTGCCTTCTTGGAGTTGCTGGGTGTTGAGATTTATGGTTATGATGCTAACTTTTCTGAAGGTAATAGTTATAGTCACTGTGAGAATCTGTGCTTAGAAGACTGTAACTGTAAGGGGTTTCAGTACTCATACAATGACGCCAAGAACTATTACAATTGTTACATCAAGATGCAATTGCTTAACGGGCGCCGATCACCGAGTTTCAGAGGAACAGTATACTTGAAAGTGCCTAAAAATCATAGCCTTTTCAGGGAAGAATCGTTTCGTTCAAATGAGCATGTTTGTGTTGTTCAAATTCCCAGGGTGTATGACAAATATCATGTAAAAAAGATTGTGAGGTTTTTTCTTTGGGTGGCCATTGTAATTGGTGCTATTGAATCGGTTTGCGTTTTTGTCGTGTGGGTTTTCATAGTTAAGACGCGCCGAAAGTCTCATGCAGATGAACACGATTACCATCCTCTGACCGATAGATTCAGAAAATATAGTTATTCAGAGTTGAAAAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGTGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTGAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTCAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAATATATGGAGAATGGTTCTTTGGCACAAAATCTGTCATCCAACACTCTTGATTGGAGTAAGAGATATAACATTGCCCTTGGAACTGCAAGAGTTCTGGCATATCTTCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAGAACATACTTCTTGACGCTAATTATCAACCCAAGGTAGCAGATTTTGGCCTGTCGAAGCTACAAAACAGGAACAACGTGAACAATTCAAGTTTTTCAATGATAAGAGGAACAAGAGGGTACATGGCACCTGAGTGGGTTCTGAACTTAGCAATCACCTCGAAGGTTGATGTTTACAGCTATGGAATTGTTCTATTGGAGATGATAACTGGGAAGAGCCCAACAACGGGTGTTCAAAACATTGATGGAGAAGAGTCGTACAATGGAAGGGTGGTGGCATGGGTGAGAGAAAAAAAGCGTGGAATATCTTGGCTAGAGCATATCATTGATCCTGCAATCCAAACAAACTATGATGAATCTAAGATGGAGGTTTTAGTCAAAGTGGCTTTGGACTGTGTTGAGGAAGACAAAGATATAAGGCCAACCATGAGCCAAGTCGTGGAAATGCTTCAAAGTGTTCCTCAGTAG 2352 0.4426 MASSILLFLFLQFFSLHTSHSAFSSLTTDSSLSVEKPDDVILSPNGVFSAGFVAVGENAYSFAVCFTQTGSHNHPTIVWMANRENPVNGKRSKLSLSGAGNLVLDDAAQRTVWSSNTASLASPLLHLRDDGNLVLRDLQGTVLWQSFDFPTDTLLPGQPLTRRTQLVSARSDTNHSSGFYKLFFDDDNVLRLLFDGPDVSSVYWPYPWLVSWDAGRSTYNSSRSAVMDSLGRFISTDSFTFITSDYGAMKQRRLKLDSDGNLRVYTLHDGWFVSWQARGDPCNIHGICGPNSACSNDHEHGRKCSCLPGHRIKNHSDWSYGCEPVFVLSCNRSESAFLELLGVEIYGYDANFSEGNSYSHCENLCLEDCNCKGFQYSYNDAKNYYNCYIKMQLLNGRRSPSFRGTVYLKVPKNHSLFREESFRSNEHVCVVQIPRVYDKYHVKKIVRFFLWVAIVIGAIESVCVFVVWVFIVKTRRKSHADEHDYHPLTDRFRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIQMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLQNRNNVNNSSFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPTTGVQNIDGEESYNGRVVAWVREKKRGISWLEHIIDPAIQTNYDESKMEVLVKVALDCVEEDKDIRPTMSQVVEMLQSVPQ 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4020g00002 783 Pfam PAN-like domain 330 392 IPR003609 -
Vium4020g00002 783 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Vium4020g00002 783 Gene3D Hepatocyte Growth Factor 340 406 - -
Vium4020g00002 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vium4020g00002 783 ProSiteProfiles EGF-like domain profile. 278 316 IPR000742 -
Vium4020g00002 783 Pfam D-mannose binding lectin 76 164 IPR001480 -
Vium4020g00002 783 Pfam Protein kinase domain 508 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4020g00002 783 FunFam S-receptor-like serine/threonine-protein kinase 474 579 - -
Vium4020g00002 783 Pfam S-locus glycoprotein domain 238 313 IPR000858 GO:0048544
Vium4020g00002 783 Gene3D - 149 272 IPR036426 -
Vium4020g00002 783 FunFam Serine/threonine-protein kinase 580 783 - -
Vium4020g00002 783 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Vium4020g00002 783 CDD STKc_IRAK 511 779 - -
Vium4020g00002 783 Gene3D Phosphorylase Kinase; domain 1 469 579 - -
Vium4020g00002 783 PIRSF SRK 1 783 IPR024171 GO:0004674
Vium4020g00002 783 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Vium4020g00002 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 207 IPR036426 -
Vium4020g00002 783 Gene3D - 19 148 IPR036426 -
Vium4020g00002 783 ProSiteProfiles PAN/Apple domain profile. 330 411 IPR003609 -
Vium4020g00002 783 ProSiteProfiles Protein kinase domain profile. 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4020g00002 783 CDD PAN_AP_plant 326 411 - -
Vium4020g00002 783 SUPERFAMILY Protein kinase-like (PK-like) 483 778 IPR011009 -
Vium4020g00002 783 PANTHER OS07G0415500 PROTEIN 3 780 - -
Vium4020g00002 783 CDD B_lectin 41 150 IPR001480 -
Vium4020g00002 783 SMART blect_4 32 150 IPR001480 -
Vium4020g00002 783 SMART serkin_6 505 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4020g00002 Vium-Chr4020 31897 34947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4020g00002 434 778 Receptor kinase-like Gene Family AT1G56120 38.028 8.47e-66 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4020g00002 Pkinase 2.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4020g00002 - - gmx:100784287 1128.24