Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4020g00001 ATGAGTTGCTTTTCATGTTTTTCATCAAGTAAAGCAGCCAAACCTTCTAACAATGGAAAGAGGATGCCACAGCCTACTTCTCATTCTCCCAACGAATCAGCTCAGTCACTACCAGAGAATCACAATTACAAGGCAAAGACAAACCATCAAACAGAACCTAAAATAGAGAAGGAGGTAAAAAAAGATAAAGAGAACAACAACATTGCTGCTCAAACTTTCACCTTCAGGGAATTGGCTAATATCACAAAGAACTTCAGGCAAGAATGCCTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAAACTTGAAAAAACCAACCAGGAAGTAGCTGTAAAGCAACTTGACAGGAATGGATTACAAGGGAACAGAGAATTTCTTGTTGAAGTTTTAATGTTGAGTCTTTTGCACCATAAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGATTATTGGTCTATGAGTACATGCCATTGGGATCCCTTGAAGACCATCTTCTTGATCTTGAACCACGACAAAAGCCTCTAGAATGGTTCCATAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAAGCGAATCCTCCAGTGATCTACCGTGACTTGAAATCATCAAACATCTTATTGGACAGAGAATTCAATGCAAAACTGTCTGATTTTGGACTTGCAAAGTTGGGTCCTACGGGAGACAAATCTCATGTATCTTCAAGAGTAATGGGTACTTATGGATACTGTGCTCCTGAGTATCAAAGAACTGGTAAACTAACTGTACAATCAGATGTATACAGCTTTGGAGTTGTTATGCTTGAATTGATCACCGGAAGGAGAGCCATTGATAACACAAGAAAACCACATGAGCAAAATCTCGTTAATTGGGCAGAACCAATATTCAAGGAGCCAAACAGGTACTCAGAATTGGCAGACCCAGTTCTTGAAGGAAAGTTTCCGGTGAGATCCTTGAATCAAGCAGTGGCAATAGCAGCCATGTGTTTGAATGAGGAGCCATCAGTGAGACCTTTGATCAGTGATGTTGTGACTGCCCTTAGTTTTCTTGGGACAATCCCAAAGGGTGAAGAAGACCAACCAGGAGCATCTCCTGTTGACATGCCCTCCCCATCACACGACCCACAACAACCCACCAATGCTTCTTCCAATCTTCTTGATCAAGATCTCGCTGCCATGGAACGCCAAAGAGCAGTTGCCGAAGCCATCGAATGGGGCAACAATTCTAGGAACAAAGCACCGCACCGTCAAACTCCTCCTTCTTTGTAA 1305 0.4161 MSCFSCFSSSKAAKPSNNGKRMPQPTSHSPNESAQSLPENHNYKAKTNHQTEPKIEKEVKKDKENNNIAAQTFTFRELANITKNFRQECLIGEGGFGRVYKGKLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLEPRQKPLEWFHRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDREFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGKLTVQSDVYSFGVVMLELITGRRAIDNTRKPHEQNLVNWAEPIFKEPNRYSELADPVLEGKFPVRSLNQAVAIAAMCLNEEPSVRPLISDVVTALSFLGTIPKGEEDQPGASPVDMPSPSHDPQQPTNASSNLLDQDLAAMERQRAVAEAIEWGNNSRNKAPHRQTPPSL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4020g00001 434 FunFam Serine/threonine-protein kinase PBS1 162 375 - -
Vium4020g00001 434 SMART serkin_6 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4020g00001 434 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Vium4020g00001 434 Gene3D Transferase(Phosphotransferase) domain 1 162 370 - -
Vium4020g00001 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vium4020g00001 434 MobiDBLite consensus disorder prediction 1 56 - -
Vium4020g00001 434 Pfam Protein kinase domain 87 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4020g00001 434 PANTHER OS07G0668900 PROTEIN 3 368 - -
Vium4020g00001 434 SUPERFAMILY Protein kinase-like (PK-like) 71 384 IPR011009 -
Vium4020g00001 434 MobiDBLite consensus disorder prediction 1 44 - -
Vium4020g00001 434 MobiDBLite consensus disorder prediction 366 434 - -
Vium4020g00001 434 FunFam Serine/threonine-protein kinase PBS1 57 161 - -
Vium4020g00001 434 CDD STKc_IRAK 91 359 - -
Vium4020g00001 434 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4020g00001 434 MobiDBLite consensus disorder prediction 385 401 - -
Vium4020g00001 434 Gene3D Phosphorylase Kinase; domain 1 54 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4020g00001 Vium-Chr4020 6102 8259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4020g00001 1 422 Glycoside Hydrolase AT3G07070 67.612 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium4020g00001 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4020g00001 - - gmx:100786405 656.751