Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4017g00001 ATGATGTCAACAACGTCTCAAACTAGTGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCAAGGCAGATGGAGTTCAATATTCCTTTTCCATCAACCCAGGCCTTCCCTCCTTTGGGTTGCCATCAATCTTTGAAATCCATCAGTGCACTGGTTCCTTCACTTTCATCTGAACCTGCTTCTTCTTCTGCGAATTTTGCAGAAACCCTATTTTCAACCGCTGTTCAAAGACAACGAGAAGATCTCACTTCAAGTTTGATAGGAGGAGGAGGAGGAGGAGGAGGACAGCTACTTTCCTTGAACAGATCGAGACTGAATCCATGGGCATGGGAAGAAGTAACCGATTGCTTGATGAGTAAAAGAATGGGAGGAGGTGATAACCATCATCTAGGGGTTTCCGCCATGAAGATGAAGAAAATGAAGGCAAGGAGAAAGGTGCGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAATACACAACACCCAAGAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTGAAGAAACGCGTGGAGCGGTTGGCGGAGGATCCAAGGATGGTGATAACCACATATGAGGGGAGACATGTGCACTCGCCATCAAATGAACTCGAAGACTCACAATCTCCATCTGAACTTAGTAGCTTCTTGTGGTAG 723 0.4578 MMSTTSQTSVNHSLFEEQDQIPRQMEFNIPFPSTQAFPPLGCHQSLKSISALVPSLSSEPASSSANFAETLFSTAVQRQREDLTSSLIGGGGGGGGQLLSLNRSRLNPWAWEEVTDCLMSKRMGGGDNHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQSPSELSSFLW 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4017g00001 240 FunFam WRKY transcription factor 57 149 223 - -
Vium4017g00001 240 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4017g00001 240 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 225 IPR044810 GO:0003700
Vium4017g00001 240 MobiDBLite consensus disorder prediction 225 240 - -
Vium4017g00001 240 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4017g00001 240 MobiDBLite consensus disorder prediction 219 240 - -
Vium4017g00001 240 Gene3D WRKY domain 150 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4017g00001 240 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4017g00001 240 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4017g00001 Vium-Chr4017 1307 4803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4017g00001 43 240 WRKY Transcription Factor Family AT4G39410 49.798 2.74e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4017g00001 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4017g00001 - - gmx:100127389 377.096