Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4012g00004 ATGACAGATGTTCCTATGGCTAGTGACAATTTGATGATGGTTTATAGTGATTTTAGAGAGTCGAACAACTTCGTGGAGGGAGTGTCACACAAGATCAGGCGACAGATTGATGATCTGGAGAGAGTGTCGGGCGCGGTGACCAGTAGTTTGACGGTGGATGGAGTACCTGTTGATTCGTACTTGACGAGGTTTGCTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGACTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATACCATCAATAGAAAGCAAACTGGAAGCTTAGCTGTGCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACATCAGAAAATTTAACTACCCTGCTTGCTATTGTTCCAAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACCAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAAGATAACGAATATGCTCTTTATACTGTAACACTATTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCTGAATCACACGAGAGTCGCAAGCAAGAGTTAGAGAAATTGATAGATGACCAGGAAAGTTTGAGGTCCTCTCTGTTGCAGTGGTGTTATACTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAATCTGAGAAGAAAGTACGCTCTATCCTTGAAGGGTTGAGCGACAGCACAAACAGTGGTTACTGGAAGACCGAGGATGATGGGGTTGGGATGGCTGGCCTTGTAGCAGGTGATGCTGATGCCCACCCTTACGTCTCGTTCACTATCAATCTTGTTTGA 1008 0.4385 MTDVPMASDNLMMVYSDFRESNNFVEGVSHKIRRQIDDLERVSGAVTSSLTVDGVPVDSYLTRFAWDEARYPTMSPLKETVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNTINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLIDDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSTNSGYWKTEDDGVGMAGLVAGDADAHPYVSFTINLV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4012g00004 335 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 9 334 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00004 335 FunFam V-type proton ATPase subunit C 122 210 - -
Vium4012g00004 335 CDD V-ATPase_C 22 332 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00004 335 Gene3D - 11 271 - -
Vium4012g00004 335 Gene3D Vacuolar atp synthase subunit c; domain 1 272 293 - -
Vium4012g00004 335 Gene3D - 122 210 - -
Vium4012g00004 335 Pfam V-ATPase subunit C 9 328 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00004 335 SUPERFAMILY Vacuolar ATP synthase subunit C 9 334 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4012g00004 Vium-Chr4012 48856 57333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4012g00004 9 334 Primary Pumps ATPases(2) AT1G12840 79.141 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4012g00004 K02148 - gmx:100803728 593.964