Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4012g00003 ATGGCGACGAGGTACTGGGTAGTGTCTCTCCCTGTTCCGAATTCCGCATCCACTTTGTGGAACAAATTGCAGGAAGAAATCTCCAAACACTCCTTCGACACCCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGACGATCTCGTCAAGTCGAACAACTTCGTGGAGGGAGTGTCACACAAGATCAGGCGACAGATTGATGATCTGGAGAGAGTGTCGGGCGCGGTGACCAGTAGTTTGACGGTGGATGGAGTACCTGTTGATTCGTACTTGACGAGGTTTGCTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGACTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATACCATCAATAGAAAGCAAACTGGAAGCTTAGCTGTGCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACATCAGAAAATTTAACTACCCTGCTTGCTATTGTTCCAAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACCAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAAGATAACGAATATGCTCTTTATACTGTAATACTATTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCTGAATCACACGAGAGTCGCAAGCAAGAGTTAGAGAAATTGATAGATGACCAGGAAAGTTTGAGGTCCTCTCTGTTGCAGTGGTGTTATACTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGTTAGATANGAGTAA 963 0.4434 MATRYWVVSLPVPNSASTLWNKLQEEISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNNFVEGVSHKIRRQIDDLERVSGAVTSSLTVDGVPVDSYLTRFAWDEARYPTMSPLKETVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNTINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVILFSRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLIDDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLVRXE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4012g00003 320 SUPERFAMILY Vacuolar ATP synthase subunit C 1 317 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vium4012g00003 320 Gene3D - 41 312 - -
Vium4012g00003 320 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 316 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00003 320 FunFam V-type proton ATPase subunit C 163 251 - -
Vium4012g00003 320 Pfam V-ATPase subunit C 5 316 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00003 320 Gene3D - 163 251 - -
Vium4012g00003 320 CDD V-ATPase_C 5 316 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00003 320 Gene3D Vacuolar atp synthase subunit c; domain 1 7 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4012g00003 Vium-Chr4012 42013 48645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4012g00003 1 317 Primary Pumps ATPases(2) AT1G12840 81.703 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4012g00003 K02148 - gmx:100803728 587.415