Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4012g00002 ATGGCGACGAGGTACTGGGTAGTGTCTCTCCCTGTTCCGAATTCCGCATCCACTTTGTGGAACAAATTGCAGGAAGAAATCTCCAAACACTCCTTCGACACCCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGACGATCTCGTCAAGTCGAACAACTTCGTGGAGGGAGTGTCACACAAGATCAGGCGACAGATTGATGATCTGGAGAGAGTGTCGGGCGCGGTGACCAGTAGTTTGACGGTGGATGGAGTACCTGTTGATTCGTACTTGACGAGGTTTGCTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGACTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTATTCATATTTCTAATGCAGATTTGGACATAATTTGA 450 0.4889 MATRYWVVSLPVPNSASTLWNKLQEEISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNNFVEGVSHKIRRQIDDLERVSGAVTSSLTVDGVPVDSYLTRFAWDEARYPTMSPLKETVDGIHGQVAKIEDDLKVIHISNADLDII 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4012g00002 149 Pfam V-ATPase subunit C 5 138 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vium4012g00002 149 Gene3D - 41 146 - -
Vium4012g00002 149 SUPERFAMILY Vacuolar ATP synthase subunit C 1 138 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vium4012g00002 149 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 138 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4012g00002 Vium-Chr4012 37667 38684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4012g00002 1 138 Primary Pumps ATPases(2) AT1G12840 80.435 1.99e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4012g00002 K02148 - vum:124836448 288.885