Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4011g00002 ATGGATCAGGAGGAACAAGATAAAGCTTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAAATCTTCCTCCAAGTGCAAAGATCTCCAAGGAAGGAAAACAACTAATGCAAGAGTGTGTTACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATAGCAAGGTACTTGCATAAATACAGGCAAGCAGAAAGGGAGAAAATCCAAAACAACAACAAAAAATATGAAGGATCAGCAACAAAATCTCTCAACCAAACTCAACTCATCCTTGCTCCACCACCACCACCATCACTCTCTAGGGTTACTCATGACAAGCTTCAAAACCCTCCCACCACAGATCAATCGTAG 444 0.4302 MDQEEQDKALPIANVGRIMKQNLPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIARYLHKYRQAEREKIQNNNKKYEGSATKSLNQTQLILAPPPPPSLSRVTHDKLQNPPTTDQS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4011g00002 147 SUPERFAMILY Histone-fold 6 108 IPR009072 GO:0046982
Vium4011g00002 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium4011g00002 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Vium4011g00002 147 MobiDBLite consensus disorder prediction 105 120 - -
Vium4011g00002 147 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vium4011g00002 147 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Vium4011g00002 147 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vium4011g00002 147 Coils Coil 78 98 - -
Vium4011g00002 147 MobiDBLite consensus disorder prediction 133 147 - -
Vium4011g00002 147 Gene3D Histone, subunit A 1 123 IPR009072 GO:0046982
Vium4011g00002 147 MobiDBLite consensus disorder prediction 100 147 - -
Vium4011g00002 147 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4011g00002 Vium-Chr4011 21724 22167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4011g00002 5 103 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.727 8.80e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium4011g00002 CBFD_NFYB_HMF 4.9e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4011g00002 K08065 - gmx:100815151 224.942