Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium400g00008 ATGAAGAAACAAGGGTGTGAGGTTGAGGCAACAGACATAAACTACAACATCCGTACAAAGGCAGCAGAGCAACCTTCTAAAATCTTCAGAAATTTTTCACAATTGAATAGGGAGGAAGATGGTCGTGAAGCAGAAGATGAAGAAAAAACTGAACAAAGATCATGCAGTGGAGTTAGGCATGTCCTCAAGAACGTGAACTGCATAGCAAAGCCACTGGAAATTCTGGCAATTGTTGGGCCAAGTGGGGCTGGGAAATCATCCCTTCTTAAGATCCTAGCTGGTAAAGCTAGTTCACAAAGTGGGTGTATCTTGGTGAATCAAGAGCATATGGATACAGCTGAGTTCAAAAAAATTTCTGGGTATGTTTTGCAAAAGGATACCTTGTTTCCCTTACTTACGGTTGAAGAAACCATAATGTTTAGTGCAAAGCTAAGGTTACGTCTTCCTCAAGAACAACTATGCTCCAGGGTCAAGTCAGTGATTCTAGAGCTTGGTCTTAGCCATGTTGCTAGGAATAGAATTGGAGATGACAGGGTCCGTGGCATATCTGGTGGTGAGAGGCGCCGAGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAGGTACTGATTTTGGATGAACCAACTTCAGGGCTTGATAGTACCTCAGCTTTGCAAATAATTGATATGCTTAAAGTAATGGCTGAATCTAGGGGGCGAACTATAATCCTGACTATCCACCAACCCGGGTACAGAATGGTGAAGTTGTTCAACTCAATACTGTTATTGGCTGATGGTATTGTGTTGCACCATGGCTCTGTGGATTTTCTGGGTGTAAATCTGAGGCTAATGGGTTTAGAAATTCCTCTTCATGTTAATGTGGTTGAGTTTGCCATTGACTCCATTAAGACCATTCAGCAACATAAAAAATGTCAGCAGGTTCAGCTAGAAGCTTCGTGGCGATTATCAAGGACAATGTTACAGGAGAAATGTGATGAGCAGGGTGAGAGTACAAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGTTAATTGATGAAGAAACCATTAGTGCGGGAATGGATATCACTTTTGATTTTGCAAATTCTGTATTGAGAGAAACTATGATTCTCACTCATAGATTCTCCAAAAATATCGTACGCACAAAGGAACTCTTTGCGTGCAGGACAATTCAAATGCTGGTTTCTGGACTGGTTTTGGGCTCAGTCTTTTGTAATCTCAAGGATGGTATGGAGGGAGCGGAAGAAAGAGTGGGTCTCTTTGCTTTCGTTTTAACGTTTATGTTATCAAGCACCACCGAAGCTCTACCAATTTTTCTGCAAGAAAGGGATATTATAATGAAAGAAATATCTAGTGGAAGCTACAGAGTTTCATCTTATGCTATCGCCAATGGCCTAGTTTCCTTGCCATTTTTGCTCATACTAGCCATTTTATTCACAGTGCCTCTGTACTGGCTTATTGATCTCAACAGGAATTTTTCGGCATTTTTGTTCTTTCTGATGCTAATCTGGCTAATTCTTTACACTGCAAATTCGATAGTGGTATGTTTCAGTGCTGCAGTGCCTAATTTCATTGTTGGGAATTCAATGATTGCCGGTGCCATCGGTTCGTTTCTTCTGTTCTCTGGATACTTCATATCAAAACAGCAAATTCCAAGTTACTGGATTTTCATGCATTATATGTCTCCATTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAAAAAAGTGCTTGGAGTACTTGTTTGGGGCATGTGTGGTGAGAGGAGAGGATGTACTTAAGCTAGCAGAGCTTGGAGGGGAGACTAGTAGATGGAAGAATGTTGGGGTGATTGTGTGCTTCATCCTGGTTTCCAGGTTCATTTATTTTGTAATTCTTAGGTACAGATGCTCACAAGGAATCATCCTAAAAAGTTGA 1938 0.4082 MKKQGCEVEATDINYNIRTKAAEQPSKIFRNFSQLNREEDGREAEDEEKTEQRSCSGVRHVLKNVNCIAKPLEILAIVGPSGAGKSSLLKILAGKASSQSGCILVNQEHMDTAEFKKISGYVLQKDTLFPLLTVEETIMFSAKLRLRLPQEQLCSRVKSVILELGLSHVARNRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAESRGRTIILTIHQPGYRMVKLFNSILLLADGIVLHHGSVDFLGVNLRLMGLEIPLHVNVVEFAIDSIKTIQQHKKCQQVQLEASWRLSRTMLQEKCDEQGESTSGKFTLQQLFQQSKLIDEETISAGMDITFDFANSVLRETMILTHRFSKNIVRTKELFACRTIQMLVSGLVLGSVFCNLKDGMEGAEERVGLFAFVLTFMLSSTTEALPIFLQERDIIMKEISSGSYRVSSYAIANGLVSLPFLLILAILFTVPLYWLIDLNRNFSAFLFFLMLIWLILYTANSIVVCFSAAVPNFIVGNSMIAGAIGSFLLFSGYFISKQQIPSYWIFMHYMSPFKYPFEGFLINEFSNSKKCLEYLFGACVVRGEDVLKLAELGGETSRWKNVGVIVCFILVSRFIYFVILRYRCSQGIILKS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium400g00008 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 269 IPR027417 -
Vium400g00008 645 Gene3D - 48 317 IPR027417 -
Vium400g00008 645 FunFam ABC transporter G family member 5 47 307 - -
Vium400g00008 645 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vium400g00008 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 629 - -
Vium400g00008 645 SMART AAA_5 71 268 IPR003593 GO:0016887
Vium400g00008 645 Pfam ABC-2 type transporter 240 318 IPR043926 GO:0140359
Vium400g00008 645 MobiDBLite consensus disorder prediction 34 53 - -
Vium400g00008 645 Pfam ABC transporter 62 210 IPR003439 GO:0005524
Vium400g00008 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 283 IPR003439 GO:0005524
Vium400g00008 645 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium400g00008 Vium-Chr400 61713 63934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium400g00008 60 288 Calmodulin-binding Proteins AT2G36910 25.000 4.33e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium400g00008 K05681 - gmx:121172640 1018.84