Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4009g00001 ATGTCAAGAAGAGGCAGAGTGCTTCTTAGCCAGTCTTTTTCTCTGCTCTCACCGGTAAAGCACAATCCTTTATCAAAATCAACACCACTCACTTCTTTATTACGAAGTAGCATCACATTCTCAACTTCTTCCTCCTCCATAACCCCTCCTATTGAAGAGTCAAAGACTTCATCTTCCAAGTCCCAAAGGGATTCACTGATTTTGGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCCCCAAAAGACTCCAAGGGTACCCCTCAAGTGGGTTCAACTTCAGTTCCATTAAGTTCAGATGCTTATACTGAAAAGGTGGTCCAAAAGGGTGTGCAGAATGACGATGAACCCACCATGGTTGTTAGAAGTTTCAAGGAGTTGGGTGTGAGTGAGGACCTTATTGAGGTAATGGAGGAGATTGGAGGGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTGTGTTGCTGAGTTCACCATCTGAACCTGACAGAACTTTGGCCTTCTTGTTGCCCCTTATTCAGTTGCTAAGACGGGATGGAGAGTTGCTTGGTTCAAATTCAAAACATCCACAAGCCGTCGTGCTTTGTGCTACGGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCAAAATATATCATCCATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATAATGGGCAGTCGCAAGCCTCAATTGGCCTAATGATAGGAACACCTTGTGAGATTCTTCAATATATTGAAGAGGGCAGCATTGTTCCTTCTGAAATAAGATACTTGGTATTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCGTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTGCTGTAAAAAAATTACAAACTATTCTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCTCCTATTGTAAAGCATCTTGAGTGCCATCATGAAGGAAATATTTCTGCAATGTCTATAGAAATGGAACAAACAGAAGTCTTTCATTTCACAGCGTCTCTTCATGCTCTTCAGAAAAAAGTGACAGAGGCCATGGATTCCCTTTTGCAACAAGAATAA 1125 0.4204 MSRRGRVLLSQSFSLLSPVKHNPLSKSTPLTSLLRSSITFSTSSSSITPPIEESKTSSSKSQRDSLILEQFKQRKLKGSPKDSKGTPQVGSTSVPLSSDAYTEKVVQKGVQNDDEPTMVVRSFKELGVSEDLIEVMEEIGGFIPSEIQCVVIPAILEGKSVLLSSPSEPDRTLAFLLPLIQLLRRDGELLGSNSKHPQAVVLCATEEKAAQCFNAAKYIIHNTKLKSAKDCASPDNGQSQASIGLMIGTPCEILQYIEEGSIVPSEIRYLVLDEADCMLGSGLGREIHKILRPLQDHESKSAVKKLQTILAISTMAEVLGEQSPIVKHLECHHEGNISAMSIEMEQTEVFHFTASLHALQKKVTEAMDSLLQQE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4009g00001 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Vium4009g00001 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 317 - -
Vium4009g00001 374 MobiDBLite consensus disorder prediction 41 66 - -
Vium4009g00001 374 SMART ultradead3 140 323 IPR014001 -
Vium4009g00001 374 MobiDBLite consensus disorder prediction 67 81 - -
Vium4009g00001 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 316 IPR027417 -
Vium4009g00001 374 Gene3D - 322 373 - -
Vium4009g00001 374 Pfam DEAD/DEAH box helicase 146 315 IPR011545 GO:0003676|GO:0005524
Vium4009g00001 374 Gene3D - 96 321 IPR027417 -
Vium4009g00001 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Vium4009g00001 374 MobiDBLite consensus disorder prediction 41 95 - -
Vium4009g00001 374 SUPERFAMILY PABC (PABP) domain 315 369 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4009g00001 Vium-Chr4009 3195 5739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4009g00001 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 25.698 1.70e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4009g00001 - - vra:106768009 637.106