Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4006g00008 ATGTTCTATTATTCAGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGGTTTGAATTTTTGGAGGCTGTCACTGGTGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGTTATTACATGAGCTGGAGCCTTTCATTGTCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTCGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCAAGAAAGCATGATGTCCTTGACTGGCCCTTACATTTCTCCCACTAGAGATGGGAATCCAGTGCATCCTTTTTCAAGGATATCAAATAAAGTGGCAGATGCTATAACAGAGTCTGCCGAAAATGGAAAGATTCAAATCATTCGACAAGGGTATCTCTCTAAACGATCATCAAGTTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATTGTAGCAATCAATCATCCCTACACAGAAATTGTGCCACCGATAATAGTGCTGGAATTTTGAGTCGCCTTCTTTCTTCACATTACCATGGAGTCATGCCTGATGACAAATGTGTAGCACGTCACACAGTGAACCTGCTCACATCAACAATCAAGTCTGATGCTGAACAATCGGATTTAAGATTCTGCTTCAGGATTATTTCACCTTCAAAGAGTTACACATTGCAGGCAGAAAATGCTGTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTTCTGATGTGTCAGAAAATGGTAACGGTCACTCTGCCAACAAGCTTCTTTTGTTAAAAGGTTGTCCAGATGATGATCTAGCATTGAATGGGGATTCTATGTCATCCGAAGACTTGCAGAAGAATAAGCAAAGTACAAAATGTGAAAAGCCAATTGATATTCTTAGGAAAGTTGGTGGCAATGACAAATGTGCTGATTGCGGCAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTCCATCGGAATCTTGGAGTACATTTATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCTCTTTGCAAACTCAGTTTGGGAAGAACTGTTGCAACCATCATGTTCTTCACAAACAGATGAGAATCCTGATGGATCATCGAAGCCGCAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGATGCAAAAGTGTTTGTTTGCCGGGTAAAGAACAACGATCTCCTTTCACAACAGGTGGCAGAAAGCATCAATACCAATGACAAGAGAGCAGTGTACCGACACATTGTGAAATCAGATGTGAATGTCAATGCTATTAGTCGTGAACAAGGTAGAACTTCTTATCCCCAGCCAATTTAAAAAGCAGATGAAAGCCCTATTTGAGTAATAATGCATTGTTGTTCAGGCTTTTCTTGCAACATGGCTTCTTCAACTAACGATCCAAACACATCATACGAAAACTCAACTCAAACAGAGGAGGACGTACAAGATGGTTCTAGTGTCCTTCACCTAGCATGCCGAAATTGTGATGTTGCAATGGTAGAGCTACTCCTACAGTATGGGGCAGACGTAAATGCTAGTGATTCTAAAGGAAAGACACCACTACATTACTGCACTATGATGGGGAAGCATGCAACTGCAAAAGTGCTTATTACAAGGGGGGCGAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCTGAACCTGACCCTGTTGACAAAGATACTGTTCCTCTAAACCAGGAAACGACACCCCCTCAAAACTCACCAGAAAAATGA 1950 0.4103 MFYYSVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIVEVLAYTQKARESYNEEQIRLCERMLEYKKHVHQESMMSLTGPYISPTRDGNPVHPFSRISNKVADAITESAENGKIQIIRQGYLSKRSSSLRGDWKRRFFVLDSRGMLYYFRKPWNGLHCSNQSSLHRNCATDNSAGILSRLLSSHYHGVMPDDKCVARHTVNLLTSTIKSDAEQSDLRFCFRIISPSKSYTLQAENAVDQMDWMEKITGVIASLLSSDVSENGNGHSANKLLLLKGCPDDDLALNGDSMSSEDLQKNKQSTKCEKPIDILRKVGGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKVWDSAVLSMLQSLGNLFANSVWEELLQPSCSSQTDENPDGSSKPQKKLFHARKPSHDDPISLKERFIHAKYDAKVFVCRVKNNDLLSQQVAESINTNDKRAVYRHIVKSDVNVNAISREQGRTSYPQPIXKADESPIXVIMHCCSGFSCNMASSTNDPNTSYENSTQTEEDVQDGSSVLHLACRNCDVAMVELLLQYGADVNASDSKGKTPLHYCTMMGKHATAKVLITRGANPLAVDKEGNTPFKLAPEPDPVDKDTVPLNQETTPPQNSPEK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4006g00008 649 PANTHER CENTAURIN/ARF 6 639 IPR045258 GO:0005096
Vium4006g00008 649 Gene3D - 528 631 IPR036770 -
Vium4006g00008 649 MobiDBLite consensus disorder prediction 415 431 - -
Vium4006g00008 649 MobiDBLite consensus disorder prediction 634 649 - -
Vium4006g00008 649 SUPERFAMILY Ankyrin repeat 547 624 IPR036770 -
Vium4006g00008 649 MobiDBLite consensus disorder prediction 404 431 - -
Vium4006g00008 649 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 298 460 - -
Vium4006g00008 649 ProSiteProfiles Ankyrin repeat region circular profile. 582 608 - -
Vium4006g00008 649 ProSiteProfiles Ankyrin repeat region circular profile. 549 580 - -
Vium4006g00008 649 SUPERFAMILY PH domain-like 127 273 - -
Vium4006g00008 649 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Vium4006g00008 649 SMART arf_gap_3 315 459 IPR001164 GO:0005096
Vium4006g00008 649 CDD PH_ACAP 130 267 - -
Vium4006g00008 649 ProSiteProfiles PH domain profile. 127 263 IPR001849 -
Vium4006g00008 649 Pfam PH domain 129 262 IPR001849 -
Vium4006g00008 649 Coils Coil 648 649 - -
Vium4006g00008 649 PRINTS HIV Rev interacting protein signature 327 346 IPR001164 GO:0005096
Vium4006g00008 649 PRINTS HIV Rev interacting protein signature 346 363 IPR001164 GO:0005096
Vium4006g00008 649 PRINTS HIV Rev interacting protein signature 369 390 IPR001164 GO:0005096
Vium4006g00008 649 SUPERFAMILY ArfGap/RecO-like zinc finger 315 453 IPR037278 -
Vium4006g00008 649 CDD ArfGap 318 446 - -
Vium4006g00008 649 ProSiteProfiles ARF GTPase-activating proteins domain profile. 315 460 IPR001164 GO:0005096
Vium4006g00008 649 SMART ANK_2a 582 611 IPR002110 GO:0005515
Vium4006g00008 649 SMART ANK_2a 549 578 IPR002110 GO:0005515
Vium4006g00008 649 Gene3D - 120 276 IPR011993 -
Vium4006g00008 649 Gene3D Arfaptin homology (AH) domain/BAR domain 1 85 IPR027267 -
Vium4006g00008 649 Pfam Putative GTPase activating protein for Arf 318 450 IPR001164 GO:0005096
Vium4006g00008 649 SMART PH_update 128 265 IPR001849 -
Vium4006g00008 649 Pfam BAR domain of APPL family 6 66 IPR004148 GO:0005515|GO:0005737
Vium4006g00008 649 ProSiteProfiles Ankyrin repeat profile. 549 581 IPR002110 GO:0005515
Vium4006g00008 649 MobiDBLite consensus disorder prediction 610 649 - -
Vium4006g00008 649 SUPERFAMILY BAR/IMD domain-like 6 150 IPR027267 -
Vium4006g00008 649 Gene3D Arf GTPase activating protein 296 460 IPR038508 -
Vium4006g00008 649 Pfam Ankyrin repeats (many copies) 551 603 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4006g00008 Vium-Chr4006 86026 89486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4006g00008 327 452 C2H2 Transcription Factor Family AT4G21160 44.882 1.03e-23 100