Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4006g00007 ATGGATTTCTCAAAACTCAATGACTCGCCCATGTTCCGGCAACAGCTTCAGTGCATGGAAGAGAGTGCAGAATCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATCTCGAAAGTACACGGAAGGGATTGGAGATGCATATGATGGAGATATTGCATTTGCAAGCGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCAGTTATGACCAAATTTGCTATTGCATTTAGAGAAATGGGTACACATAAGGAAGTTCTTCGGTCACAGGCGGAGCACATGCTAAATGACCGCTTACTGAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGATTTGAGAAAGCTTCCATTGTACATGATCAGGCACGTGAGAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATGTTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGAACCTCCTTTGAGGAATCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGGTTTGAATTTTTGGAGGCTGTCACTGGTGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGTTATTACATGAGCTGGAGCCTTTCATTGTCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTCGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCAAGAAAGCATGATGTCCTTGACTGGCCCTTACATTTCTCCCACTAGAGATGGGAATCCAGTGCATCCTTTTTCAAGGATATCCAATAAAGTGGCAGATGCTATAACAGAGTCTGCCGAAAATGGAAAGATTCAAATCATTCGACAAGGGTATCTCTCTAAACGATCATCAAGTTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACAGTGTAGCAATCAATCATCCCTACACAGAAATTGTGCCACCGATAATAGTGCTGGAATTTTGAGTCGCCTTCTTTCTTCACATTACCATGGAGTCATGCCTGATGACAAATGTGTAGCACGTCACACAGTGAACCTGCTCACATCAACAATCAAGTCTGATGCTGAACAATCGGATTTAAGATTCTGCTTCAGGATTATTTCACCTTCAAAGAGTTACACATTGCAGGCAGAAAATGCTGTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTTCTGATGTGTCAGAAAATGGTAACGGTCACTCTGCCAACAAGCTTCTTTTGTTAAAAGGTTGTCCAGATGATGATCTAGCATTGAATGGGGATTCTATGTCATCCGAAGACTTGCAGAAGAATAAGCAAAGTACAAAATGTGAAAAGCCAATTGATATTCTTAGGAAAGTTGGTGGCAATGACAAATGTGCTGATTGCGGCAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTCCATCGGAATCTTGGAGTACATTTATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCTCTTTGCAAACTCAGTTTGGGAAGAACTGTTGCAACCATCATGTTCTTCACAAACAGATGAGAATCCTGATGGATCATCGAAGCCGCAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGATGCAAAAGTGTTTGTTTGCCGGGTAAAGAACAACGATCTCCTTTCACAACAGGTGGCAGAAAGCATCAATGCCAATGACAAGAGAGCAGTGTACCGACACATTGTGAAATCAGATGTGAATGTCAATGCTATTAGTCGTGAACAAGGTAGAACTTCTTATCCCCAGCCAATTTAAAAAGCAGATGAAAGCCCTATTTGAGTAATAATGCATTGTTGTTCAGGCTTTTCTTGCAACATGGCTTCTTCAACTAACGATCCAAACACATCATACGAAAACTCAACTCAAACAGAGGAGGACGTACAAGATGGTTCTAGTGTCCTTCACCTGGCATGCCGAAATTGTGATGTTGCAATGGTAGAGCTACTCCTACAGTATGGGGCAGACGTAAATGCTAGTGATTCTAAAGGAAAGACACCACTACATTACTGCACTATGATGGGGAAGCATGCAACTGCAAAAGTGCTTATTACAAGGGGGGCGAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCTGAACCTGACCCTGTTGACAAAGATACTGTTCCTCTAAACCAGGAAACGACACCCCCTCAAAACTCACCAGAAAAATGA 2436 0.4179 MDFSKLNDSPMFRQQLQCMEESAESLRSRCFKFYKGSRKYTEGIGDAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFAIAFREMGTHKEVLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASIVHDQAREKFMSLRKSTKIDVATVVEEELHNARTSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIVEVLAYTQKARESYNEEQIRLCERMLEYKKHVHQESMMSLTGPYISPTRDGNPVHPFSRISNKVADAITESAENGKIQIIRQGYLSKRSSSLRGDWKRRFFVLDSRGMLYYFRKQCSNQSSLHRNCATDNSAGILSRLLSSHYHGVMPDDKCVARHTVNLLTSTIKSDAEQSDLRFCFRIISPSKSYTLQAENAVDQMDWMEKITGVIASLLSSDVSENGNGHSANKLLLLKGCPDDDLALNGDSMSSEDLQKNKQSTKCEKPIDILRKVGGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKVWDSAVLSMLQSLGNLFANSVWEELLQPSCSSQTDENPDGSSKPQKKLFHARKPSHDDPISLKERFIHAKYDAKVFVCRVKNNDLLSQQVAESINANDKRAVYRHIVKSDVNVNAISREQGRTSYPQPIXKADESPIXVIMHCCSGFSCNMASSTNDPNTSYENSTQTEEDVQDGSSVLHLACRNCDVAMVELLLQYGADVNASDSKGKTPLHYCTMMGKHATAKVLITRGANPLAVDKEGNTPFKLAPEPDPVDKDTVPLNQETTPPQNSPEK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4006g00007 811 Pfam PH domain 296 424 IPR001849 -
Vium4006g00007 811 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Vium4006g00007 811 SUPERFAMILY PH domain-like 294 435 - -
Vium4006g00007 811 Pfam Putative GTPase activating protein for Arf 480 612 IPR001164 GO:0005096
Vium4006g00007 811 CDD BAR_SFC_plant 15 215 IPR035670 -
Vium4006g00007 811 MobiDBLite consensus disorder prediction 796 811 - -
Vium4006g00007 811 SUPERFAMILY ArfGap/RecO-like zinc finger 477 615 IPR037278 -
Vium4006g00007 811 ProSiteProfiles ARF GTPase-activating proteins domain profile. 477 622 IPR001164 GO:0005096
Vium4006g00007 811 SUPERFAMILY Ankyrin repeat 712 786 IPR036770 -
Vium4006g00007 811 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Vium4006g00007 811 MobiDBLite consensus disorder prediction 772 811 - -
Vium4006g00007 811 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 460 622 - -
Vium4006g00007 811 Gene3D - 690 793 IPR036770 -
Vium4006g00007 811 SMART arf_gap_3 477 621 IPR001164 GO:0005096
Vium4006g00007 811 Gene3D Arf GTPase activating protein 458 622 IPR038508 -
Vium4006g00007 811 ProSiteProfiles Ankyrin repeat profile. 744 776 IPR002110 GO:0005515
Vium4006g00007 811 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Vium4006g00007 811 ProSiteProfiles PH domain profile. 294 425 IPR001849 -
Vium4006g00007 811 PANTHER CENTAURIN/ARF 2 801 IPR045258 GO:0005096
Vium4006g00007 811 CDD PH_ACAP 297 429 - -
Vium4006g00007 811 Gene3D - 287 438 IPR011993 -
Vium4006g00007 811 Pfam Ankyrin repeats (many copies) 713 765 IPR002110 GO:0005515
Vium4006g00007 811 ProSiteProfiles Ankyrin repeat region circular profile. 744 770 - -
Vium4006g00007 811 CDD ArfGap 480 608 - -
Vium4006g00007 811 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Vium4006g00007 811 SMART PH_update 295 427 IPR001849 -
Vium4006g00007 811 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vium4006g00007 811 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Vium4006g00007 811 Coils Coil 118 138 - -
Vium4006g00007 811 PRINTS HIV Rev interacting protein signature 508 525 IPR001164 GO:0005096
Vium4006g00007 811 PRINTS HIV Rev interacting protein signature 531 552 IPR001164 GO:0005096
Vium4006g00007 811 PRINTS HIV Rev interacting protein signature 489 508 IPR001164 GO:0005096
Vium4006g00007 811 MobiDBLite consensus disorder prediction 566 593 - -
Vium4006g00007 811 MobiDBLite consensus disorder prediction 577 593 - -
Vium4006g00007 811 SMART ANK_2a 711 740 IPR002110 GO:0005515
Vium4006g00007 811 SMART ANK_2a 744 773 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4006g00007 Vium-Chr4006 75289 85760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4006g00007 489 614 C2H2 Transcription Factor Family AT4G21160 44.882 1.23e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4006g00007 K12489 - gmx:100797073 1274.23