Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4005g00003 ATGGATATGAGTGACAAAGAGAAGTTCGAGGTGGATAGAAACGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTCGGGGGTGCAAATCTTGCAAATTCTTCTGCAGGTTTGGTTGCCATGGGAAATTCTGTGAATGCCAGCAGAGGGGATTTGATTGGTTCGTCTTCATGTTCCTCTGCTTCAATGGTGGACTCTTTTGGTGCAAGCTACTGGGACAACACCACCGGCTCCCGAAACCTGGGATTTTGTGACTTTAATGTCCACAACAATGGGGGTTCTTCAAATACTGCTGGAATTAGAAAAGATGGTTTTGGCTTTGGAAGAGTAGCTCAGGTTCATCATGGAACACTTGAAATGGCTTGGAGCCCTGCTAATTCTATGTTACAGAATGGCCCGGGGTTGTTTCCGCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGGGGGAATTTTACTGATATGGTGAACTCTTATGGTATTGCTCAATCAACAGGGGTTTATGGGGCAAGAGATGCTATTGCAGGCCATGGGTTGAAATCTGTAACTGAAGGGCAATCTCAAGGAGGTGATATGAATGTAATTGAAGCTACGAAAGATTTGTCTCCATCTGTTGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAAAAGAAGTGAAGGTCATATTACGTCTCAAGATGATGGGAAGCTATCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGCTGGCCAGGATGATTCTCCATTGATGGAAGGTGCTAGTGGAGAGCCTTCAATCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGGCTGGACGCTGATAATGGGAAAGGCAATGGAGCTCCAGAAATTCCTAATGATGCTGCTCAGGACAACTCTGACAATCAACAGATGGTAGGCCATCAACCAATTCCAGCAACCAAGTCATCTGGGAAGAATGCCAAACTAGGGTCTCAAGCTTCTGATCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCTGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATAATCAACTATGTACAATCACTTCAGAGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCGCGGCTGGATTTTAATATTGAAGGACTTCTTGCAAAAGATATTCTTCAACATCGGCCTGGTCCTTCTTCTGGTCTAGGGTTTCCTCTAGATATATCCATGGCTTTTCCTCCATTACATCCATCTCAACCAGGGCTGATTCATCCAATTATTCCCAACATGGCAAACTCGGCTGACATTCTTCAAAGAAACATCCATCAACAGTTAGCTCCCTTGAATGGTGAATTGAAGGAGCCAAATCAGCTATCTGATGTATGGGATGATGAGCTTCACAACGTCGTACAGATGAGTTTTGCAACAACTGCTCCCCTGAGTAATGAAAATGTTGATGGTACTGTGTCAGCAAGTCAGATGAAAGTTGAACTTTGA 1656 0.4402 MDMSDKEKFEVDRNEDPMGYSSGMHSDWRFGGANLANSSAGLVAMGNSVNASRGDLIGSSSCSSASMVDSFGASYWDNTTGSRNLGFCDFNVHNNGGSSNTAGIRKDGFGFGRVAQVHHGTLEMAWSPANSMLQNGPGLFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGVYGARDAIAGHGLKSVTEGQSQGGDMNVIEATKDLSPSVEHLASKGSPLKSDKRSEGHITSQDDGKLSLVRPANESDRAESSDDGAGQDDSPLMEGASGEPSIKGLNSKKRKRSGLDADNGKGNGAPEIPNDAAQDNSDNQQMVGHQPIPATKSSGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQHRPGPSSGLGFPLDISMAFPPLHPSQPGLIHPIIPNMANSADILQRNIHQQLAPLNGELKEPNQLSDVWDDELHNVVQMSFATTAPLSNENVDGTVSASQMKVEL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4005g00003 551 Gene3D - 361 434 IPR036638 GO:0046983
Vium4005g00003 551 SMART finulus 370 420 IPR011598 GO:0046983
Vium4005g00003 551 MobiDBLite consensus disorder prediction 228 243 - -
Vium4005g00003 551 MobiDBLite consensus disorder prediction 1 15 - -
Vium4005g00003 551 MobiDBLite consensus disorder prediction 252 267 - -
Vium4005g00003 551 MobiDBLite consensus disorder prediction 1 20 - -
Vium4005g00003 551 Pfam Helix-loop-helix DNA-binding domain 367 415 IPR011598 GO:0046983
Vium4005g00003 551 FunFam Basic helix-loop-helix transcription factor 361 433 - -
Vium4005g00003 551 MobiDBLite consensus disorder prediction 219 352 - -
Vium4005g00003 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 433 IPR036638 GO:0046983
Vium4005g00003 551 MobiDBLite consensus disorder prediction 313 344 - -
Vium4005g00003 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983
Vium4005g00003 551 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 248 479 IPR024097 GO:0006355
Vium4005g00003 551 CDD bHLH_AtBPE_like 354 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4005g00003 Vium-Chr4005 41067 44534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4005g00003 1 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 41.713 3.59e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4005g00003 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4005g00003 - - gmx:100797720 940.258