Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00026 ATGGCTAGGTCTGCAAAAGGGCATCAAGATGAATTGGAGGACGATGAAGAAGAAGAATTCCTAACTGCAAACACCTCTGCCTCTCTCAACAAAGTGAAGGTGGACGAACCCAGCACGGGGAAGAGAGGGAATACGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAATGAAAGGTTTCAAGTTCTGAGAGATCTCATTCCTCAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGACAAGTTACAAATTTATGAGAAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAGTTAATTCCATGGAGAAATCCTCACGCACCTGCAGAAAATACTACAGATCCTTCTCAAAGTATACAAAATGGGTCTGTTGATGAGAAAAATAACAGTGCATCTCCACTGTTTCCCGGAAATGTACCGAACCCTATGGAGTCTGACTTCTCAATGTTGACTGTTCAGAAGGGTCACCTCCCTGGTTCATCTACAGAAGCAGTTCCCCTGACCATGCAAATGCTGTTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGGCAACCCAACATCTTCAGGAATCTGTTTCTAACGTTGACATGCATTCACATACCCAGCCACAACTGTGGCTTGATAAATCAAACAAGGGCAACTATATTCTTCCACATGATAGTACAATGAAGGAACAGGAGGAGCTAGTGATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCCGGGGTAGACATGTCCCAGACTAATCTCTCGGTGCAAATTGATGTTGGTAGACGAGCAAATGCTGGATTGGTCCCCTCTGCATATATTTCAAAGGTTCATGAAAATCAATTTGAGAGCAATCCAGCAATTTCAGTTTCCGGATTTGATTACTGCATTATTGAATCCGAACAAAGTTCAAAGAGGCTCAGACAAGAAGCAAGCTAG 1029 0.4286 MARSAKGHQDELEDDEEEEFLTANTSASLNKVKVDEPSTGKRGNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQDKLQIYEKSYEGWSQEPTKLIPWRNPHAPAENTTDPSQSIQNGSVDEKNNSASPLFPGNVPNPMESDFSMLTVQKGHLPGSSTEAVPLTMQMLLDMFDPVVSSGMATQHLQESVSNVDMHSHTQPQLWLDKSNKGNYILPHDSTMKEQEELVIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRANAGLVPSAYISKVHENQFESNPAISVSGFDYCIIESEQSSKRLRQEAS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00026 342 Gene3D - 43 116 IPR036638 GO:0046983
Vium4003g00026 342 MobiDBLite consensus disorder prediction 1 61 - -
Vium4003g00026 342 MobiDBLite consensus disorder prediction 126 153 - -
Vium4003g00026 342 Coils Coil 92 112 - -
Vium4003g00026 342 MobiDBLite consensus disorder prediction 115 153 - -
Vium4003g00026 342 MobiDBLite consensus disorder prediction 35 61 - -
Vium4003g00026 342 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Vium4003g00026 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vium4003g00026 342 SMART finulus 51 101 IPR011598 GO:0046983
Vium4003g00026 342 CDD bHLH_AtBIM_like 44 120 - -
Vium4003g00026 342 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 339 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vium4003g00026 342 FunFam BHLH domain class transcription factor 43 115 - -
Vium4003g00026 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00026 Vium-Chr4003 128169 132609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00026 3 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.967 1.94e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4003g00026 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00026 - - pvu:PHAVU_008G025500g 568.54