Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00022 ATGGAGGTTGTTTTGGCGTCGTCGTCTCTAGACGGCGGAATAGGGTGCTGGGATCTTCACACCGGCGCGGAGCAGCTCCGCTATAAATCTTGCTCCTCCCCTTCTCACGGCCTTGTCGCCGTTGGTCCTCGCTTCATCGCCTCCTCTCAGCTTCGAGAACCTTCAGCAACATCTGGTTCTGTTCTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTGAAGAGCTTTCCCGCTGAACCTATTAAGCCCCTTGCTTCAAATCACCTGGGAACCTTCATTGCTGGTGGAGCTTTGTCTGGGGATATTTACTTGTGGGAAGTTGAAACCGGTAGATTGCTTAAGAAGTGGCATGCACATTTAGGGGCGGTTACTTGTCTGGTTTTTTCTGAAGATGACTCGCTGTTGGTATCTGGTTGTGGAGATGGAACCGTAAGAGTTTGGTCTCTCTTCATGATATTCGATGAATTCAGAGGTCAGCTGGCTAATAATCTTTATGAGTATAGTTTTTCCGGGCACACCCTGTGCGTGACTGATGTTGTGATTGGTAATGGAGGGTGCAATGCAATTATTGTGTCAGCTTCTGAGGATAAAACTTGCAAGGTATGGAGCTTATCTAGGGGAACACTACTAAGAAATATAGTATTCCCTTCACATATTGATTCCATTGCATTGGATCCAGCTGAACATGTCTTTTATGCTGGCAGTAGAGATGGAAAGATATTTATTGCGGCACTTAGCACTGAAAGCGTTGCTAGTAATAATTGTGGGATGCATATCATTGGTTCTTTTTCTAACCAGAGCAAGAGAGTTACTTGCTTAGCATATAGCATGAGTGAGAATTTGTTAATATCCGGGTCAGAGGATGGAATGGTTCGTGTTTGGGATGCAAGAACTCGAACCAATGTCCGAGTGTTCAAACATGCTAAAGGGCCTGTAAATAATATTCTTGTTGTTAGACGAGAAAACTCAAGTAATCACATATCTTCTAATGTACAAACATCATCAAGAAAGCAAGGGGCTAATTTACCCCCTCCATTGGAAAAATATGCAAATTCCATACATGAAGACTCAGATATGAACACTACGATCAGTCTTGGGGGTGACAGGAGTTCCGGAGATCCTTCATACCTCAGTTCTCATGTGATATCTAATTACGTTAAGGAACTTCAGCATCAAGGATCAGCTGCTGCTTCTGAAATGGAGACGGAGAAACTAAAACATGATTACCAAAGGGCAATGCAAATGGCTAACCAATGGAAGAAAATGTATGAAAACTTAAATAAATTTTGTGTGAAAGAACTGTTGGATGGTAGTCAAGCCAGAACCTTAGATGAAAATCACAATTAA 1347 0.4306 MEVVLASSSLDGGIGCWDLHTGAEQLRYKSCSSPSHGLVAVGPRFIASSQLREPSATSGSVLFWSWSKPQVEVKSFPAEPIKPLASNHLGTFIAGGALSGDIYLWEVETGRLLKKWHAHLGAVTCLVFSEDDSLLVSGCGDGTVRVWSLFMIFDEFRGQLANNLYEYSFSGHTLCVTDVVIGNGGCNAIIVSASEDKTCKVWSLSRGTLLRNIVFPSHIDSIALDPAEHVFYAGSRDGKIFIAALSTESVASNNCGMHIIGSFSNQSKRVTCLAYSMSENLLISGSEDGMVRVWDARTRTNVRVFKHAKGPVNNILVVRRENSSNHISSNVQTSSRKQGANLPPPLEKYANSIHEDSDMNTTISLGGDRSSGDPSYLSSHVISNYVKELQHQGSAAASEMETEKLKHDYQRAMQMANQWKKMYENLNKFCVKELLDGSQARTLDENHN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00022 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Vium4003g00022 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Vium4003g00022 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Vium4003g00022 448 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Vium4003g00022 448 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Vium4003g00022 448 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Vium4003g00022 448 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Vium4003g00022 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Vium4003g00022 448 Gene3D - 1 217 IPR015943 GO:0005515
Vium4003g00022 448 PANTHER WD-REPEAT PROTEIN 18 2 435 IPR045227 -
Vium4003g00022 448 MobiDBLite consensus disorder prediction 323 343 - -
Vium4003g00022 448 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Vium4003g00022 448 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Vium4003g00022 448 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Vium4003g00022 448 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 312 IPR011047 -
Vium4003g00022 448 MobiDBLite consensus disorder prediction 323 340 - -
Vium4003g00022 448 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Vium4003g00022 448 Gene3D - 218 329 IPR015943 GO:0005515
Vium4003g00022 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Vium4003g00022 448 SMART WD40_4 256 295 IPR001680 GO:0005515
Vium4003g00022 448 SMART WD40_4 206 244 IPR001680 GO:0005515
Vium4003g00022 448 SMART WD40_4 69 106 IPR001680 GO:0005515
Vium4003g00022 448 SMART WD40_4 109 148 IPR001680 GO:0005515
Vium4003g00022 448 SMART WD40_4 162 203 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00022 Vium-Chr4003 77918 83937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00022 88 308 U-box Gene Family AT2G33340 27.027 1.64e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00022 K14829 - gmx:100775776 748.043