Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00009 ATGGGTTCAGTTTGTAGCTGTTTTAACGTTAATGACATTGAAGATTATTTGAATCCAAATAGTCCTGTATACAGGAACTGTATGTGTTTTGGTTGTTTCATACAGTATTTTTTGACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCGGTTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACACTTATCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCGGATCCCAGGTTTTTCCGTTCGCAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTGAGAGATGATGGAGAAGCTGACTCAGAATCTTTAAATTTAGATGGCAAATGGAATGATACCAGTGAAGATGGAGCAAAAGAATACCGTAAGTCCACCGTGAGACTTTCATCAGCAAAATTTACAACTGGAGATGGGGTTATCTATTCATCATCGGAAGAGGAGGAATGCTGTCCGACTTGTCTAGAAGAATACACCGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 678 0.4115 MGSVCSCFNVNDIEDYLNPNSPVYRNCMCFGCFIQYFLTVYASIFRRGEVHAVPSSIQGAASMTSTASLDNSLSDTYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRDDGEADSESLNLDGKWNDTSEDGAKEYRKSTVRLSSAKFTTGDGVIYSSSEEEECCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00009 225 CDD RING-H2_AIRP1-like 171 219 - -
Vium4003g00009 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 222 IPR013083 -
Vium4003g00009 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vium4003g00009 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Vium4003g00009 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vium4003g00009 225 MobiDBLite consensus disorder prediction 70 140 - -
Vium4003g00009 225 SMART ring_2 175 215 IPR001841 -
Vium4003g00009 225 MobiDBLite consensus disorder prediction 91 130 - -
Vium4003g00009 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 223 - -
Vium4003g00009 225 SUPERFAMILY RING/U-box 170 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00009 Vium-Chr4003 26070 30281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00009 1 224 C3H Transcription Factor Family AT5G15790 58.009 1.09e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00009 - - gmx:100788192 405.986