Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00008 ATGGGTTCAGTTTGTAGCTGTTTTAACGTTAATGACATTGAAGATTATTTGAATCCAAATAGTCCTGTATACAGGAACTGTATGTGTTTTGGTTGTTTCATACAGTATTTTTTGACTGTGTATGCCTCAATATTCCGTAGAGGGGAAGTGCATGCGGTTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACACTTATCGTTCTCCTCCAAGGCCGTTGCCTTATGATGCGGATCCCAGGTTTTTCCGTTCGCAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTGAGAGATGATGGAGAAGCTGACTCAGAATCTTTAAATTTAGATGGCAAATGGAATGATACCAGTGAAGATGGAGCAAAAGAATACCGTAAGTCCACCGTGAGACTTTCATCAGCAAAATTTACAACTGGAGATGGGGTTATCTATTCATCATCGGAAGAGGAGGAATGCTGTCCGACTTGTCTAGAAGAATACACCGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTAATGTTTACTTGGTGA 669 0.4111 MGSVCSCFNVNDIEDYLNPNSPVYRNCMCFGCFIQYFLTVYASIFRRGEVHAVPSSIQGAASMTSTASLDNSLSDTYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRDDGEADSESLNLDGKWNDTSEDGAKEYRKSTVRLSSAKFTTGDGVIYSSSEEEECCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMFTW 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00008 222 CDD RING-H2_AIRP1-like 171 219 - -
Vium4003g00008 222 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 221 - -
Vium4003g00008 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 220 IPR013083 -
Vium4003g00008 222 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vium4003g00008 222 MobiDBLite consensus disorder prediction 70 139 - -
Vium4003g00008 222 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 219 - -
Vium4003g00008 222 SMART ring_2 175 215 IPR001841 -
Vium4003g00008 222 MobiDBLite consensus disorder prediction 91 130 - -
Vium4003g00008 222 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vium4003g00008 222 SUPERFAMILY RING/U-box 170 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00008 Vium-Chr4003 26070 30293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00008 1 219 C3H Transcription Factor Family AT5G15790 57.965 1.51e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00008 - - gmx:100788192 394.045