Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00004 ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAATCAACCAACAATTTTGATAATAACAGACTAATTGCACGAGGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCGCAGTGAGGCGATTTAAGGGGAATTATGAAGGGGTAGAAAGTGAAATATTCAAAAGAGAAGTAGAGTTACTGTTTCAGCTTCATCACCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGACCATTGTGCAAGAATACATGTCCAATGGATCTCTAGATCGATACCTGGGAGATGAGGTTAGGGAAGCACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGAATACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAACATCAGTCCTCTCATCATTCTTTTGGATGAGAACATGCACCCAAAACTCTCAGGTTTCGGCCTTAGTTTAATGGGAGCACATTTCAAAGAACAGTCAAAACCAATTCAATCGGAAATTATAGGTCGTCCTAGCCACTTACCTCTGGAGTACGTAAGGGACGGTACTGTCACACATAAATGTGATGTTTACGCATTTGGTGTTGTTCTGCTACAAGTTGTAAGGGGAACAAAAAAATTTCCAATGTCACAAGAACTTATGGGGAAGTCTATTGAGGAGAATATTGATCTGAAAATCAAAGGAAAGATTGCACCGGAGTGTTGGCAAGTGTTTATAGACATAGCCTTGAAATGCATAGAGGATGAACCTGACGAACGACCTGAAATGGGTGAAGTGGAGGTAGAACTTGAGCTTGCTCTGTTGTTGCAAGAACAAGCAGATGTCACAAACATCAATAGTTATTATACCTTATCGTCCAAAACCATTATTAACCCAAAATCTAAGTGGAGGTGGGGATTTGACGATGTGGCTACTAAGCTTTTGAAGTAG 1050 0.4057 MFLKCFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDNNRLIARGGWVKVYKGCLQHIDGSDYAVAVRRFKGNYEGVESEIFKREVELLFQLHHPNCVSIVGFCNHKKEKTIVQEYMSNGSLDRYLGDEVREALPWKKRIEICIGAARGIHYLHAGLKRTIIHRNISPLIILLDENMHPKLSGFGLSLMGAHFKEQSKPIQSEIIGRPSHLPLEYVRDGTVTHKCDVYAFGVVLLQVVRGTKKFPMSQELMGKSIEENIDLKIKGKIAPECWQVFIDIALKCIEDEPDERPEMGEVEVELELALLLQEQADVTNINSYYTLSSKTIINPKSKWRWGFDDVATKLLK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00004 349 ProSiteProfiles Protein kinase domain profile. 39 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4003g00004 349 SUPERFAMILY Protein kinase-like (PK-like) 14 308 IPR011009 -
Vium4003g00004 349 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Vium4003g00004 349 PANTHER OS07G0166700 PROTEIN 23 310 IPR045272 GO:0004714|GO:0006468
Vium4003g00004 349 Pfam Protein tyrosine and serine/threonine kinase 42 301 IPR001245 GO:0004672|GO:0006468
Vium4003g00004 349 FunFam Receptor-like protein kinase ANXUR2 5 119 - -
Vium4003g00004 349 Gene3D Transferase(Phosphotransferase) domain 1 120 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00004 Vium-Chr4003 18328 19819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00004 7 314 Receptor kinase-like Gene Family AT3G51550 39.198 1.51e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4003g00004 PK_Tyr_Ser-Thr 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00004 - - var:108327132 500.36