Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00003 ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAGTCAACCAACAATTTTGATCATAAGAGACTAATTGCACGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCACAGTGAGGCGATTTAATGTGGAAGACATTGAAATGTTCAAAAGAGAAGTAGAGTTACTGTGTCAGCTTCATCATCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGATCACTGTGCACGAATACAATAGATCTCTACTTTACTACCTCCTAGATGAGGTTAGGGAAACACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAGCATCAATTCTGCCAGCATTCTTTTGGATGACAACATGCACCCAAAACTCTCAAGTTTCGGCCTTAGCATAATGGGAGCACATTTCAAAGAAAAGTCAAAACCAATACAAACGGATCTTGTAGGTCTTGTTCACTACTTATCTCTAGAGTACATAAAGGATGGTATTGTCACACATAAATGTGATGTTTACGCATTTGGTATTGTTCTGCTAGAAGTTGTAACGGGAGTAAGATTTTTTCCAATACCAAAAGAACTTATGGGGAAGTGTGTTGAGGAGAATATTGATCCGAAAATCAAAGGCAAGATTGCACCAGAGTGTTGGCAAGTGTTTATAGACATAGCCTTGAGATGTATAGAGGATGAACCTGACGAACGACCAGAAATGGGTGAAGTGGAGATGGAACTTGAGCTTGCTTTATTGTTGCATGAACAAGTAGATGTCACAAATATCGATAGTGATTATACCTTATTCTCCAAAACTATTATTATCCCAAAATCAGAAGGGAATTTTCAGTATGTCATTGGCCTAACAGAACAGGAAACCGTATGCAGTGACAAGGAGGGAAAAGTTGTTAGGCAAAAAAGTCACGTGGCAAGTTATCCGCAAGCTGAGGCCATTGTGAAAAGGCAACGAAGAGAGAATATTTTATGGAAGGACTTGGTGCAGTGA 1152 0.3976 MFLKCFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDHKRLIARGWVKVYKGCLQHIDGSDYAVTVRRFNVEDIEMFKREVELLCQLHHPNCVSIVGFCNHKKEKITVHEYNRSLLYYLLDEVRETLPWKKRIEICIGAARGLHYLHAGLKRTIIHRSINSASILLDDNMHPKLSSFGLSIMGAHFKEKSKPIQTDLVGLVHYLSLEYIKDGIVTHKCDVYAFGIVLLEVVTGVRFFPIPKELMGKCVEENIDPKIKGKIAPECWQVFIDIALRCIEDEPDERPEMGEVEMELELALLLHEQVDVTNIDSDYTLFSKTIIIPKSEGNFQYVIGLTEQETVCSDKEGKVVRQKSHVASYPQAEAIVKRQRRENILWKDLVQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00003 383 Gene3D Transferase(Phosphotransferase) domain 1 115 316 - -
Vium4003g00003 383 Pfam Protein tyrosine and serine/threonine kinase 50 295 IPR001245 GO:0004672|GO:0006468
Vium4003g00003 383 ProSiteProfiles Protein kinase domain profile. 39 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4003g00003 383 FunFam Receptor-like protein kinase ANXUR2 5 114 - -
Vium4003g00003 383 Gene3D Phosphorylase Kinase; domain 1 7 114 - -
Vium4003g00003 383 PANTHER OS07G0166700 PROTEIN 23 303 IPR045272 GO:0004714|GO:0006468
Vium4003g00003 383 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00003 Vium-Chr4003 9084 16084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00003 8 307 Receptor kinase-like Gene Family AT3G51550 37.267 5.09e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4003g00003 PK_Tyr_Ser-Thr 5.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00003 - - var:108327132 736.873