Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00002 ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAGTCAACCAACAATTTTGATCATAAGAGACTAATTGCACGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCACAGTGAGGCGATTTAATGTGGAAGACATTGAAATGTTCAAAAGAGAAGTAGAGTTACTGTGTCAGCTTCATCATCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACAAAAAAGAGAAGATCACTGTGCACGAATACAATAGATCTCTACTTTACTACCTCCTAGATGAGGTTAGGGAAACACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAGCATCAATTCTGCCAGCATTCTTTTGGATGACAACATGCACCCAAAACTCTCAAGTTTCGGCCTTAGCATAATGGGAGCACATTTCAAAGAAAAGTCAAAACCAATACAAACGGATCTTGTAGGTAATTGTTCTTTAAGTATGTTATTGTACCGTAATACATTGATGAGATTCTCTGACTCCAAAGAACTATTTGATAGGCTAAACTATCAAATATGGCCTGTCAAAATGGAAGCACATCTTGATGTTAACGATATCAAGAGAGACAAATATGATAAAAAGGAAAAAGTGGGAATCTTTGAAGGCTATAACTCAACATCAAAAGCCTATAGAATATTCTTGCCACATTGTAATAAAATTATTGTTAGCAGAGATGTGCAATTCTTTGAGGAAGAAAAATGGGGTAAGGAAAATGAGAAGAAATCGCTTCAAGTTCAGGAGGAAAGTGTTGGGTGA 936 0.3793 MFLKCFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDHKRLIARGWVKVYKGCLQHIDGSDYAVTVRRFNVEDIEMFKREVELLCQLHHPNCVSIVGFCNHKKEKITVHEYNRSLLYYLLDEVRETLPWKKRIEICIGAARGLHYLHAGLKRTIIHRSINSASILLDDNMHPKLSSFGLSIMGAHFKEKSKPIQTDLVGNCSLSMLLYRNTLMRFSDSKELFDRLNYQIWPVKMEAHLDVNDIKRDKYDKKEKVGIFEGYNSTSKAYRIFLPHCNKIIVSRDVQFFEEEKWGKENEKKSLQVQEESVG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00002 311 SUPERFAMILY Protein kinase-like (PK-like) 12 191 IPR011009 -
Vium4003g00002 311 FunFam Receptor-like protein kinase ANXUR2 5 114 - -
Vium4003g00002 311 Gene3D Phosphorylase Kinase; domain 1 7 114 - -
Vium4003g00002 311 Pfam Protein tyrosine and serine/threonine kinase 50 186 IPR001245 GO:0004672|GO:0006468
Vium4003g00002 311 Gene3D Transferase(Phosphotransferase) domain 1 115 210 - -
Vium4003g00002 311 ProSiteProfiles Protein kinase domain profile. 39 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4003g00002 311 PANTHER OS07G0166700 PROTEIN 23 203 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00002 Vium-Chr4003 4329 7641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00002 7 186 Receptor kinase-like Gene Family AT3G51550 41.398 1.08e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4003g00002 PK_Tyr_Ser-Thr 4.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00002 - - vum:124836406 446.817