Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4003g00001 TGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAGTCAACCAACAATTTTGATCATAAGAGACTAATTGCACGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACGCAGTCACAGTGAGGCGATTTAATGTTGAAGACATTGAAATGTTCAAAAGAGAAGTAGAGTTACTGTGTCAGCTTCATCATCCAAATTGTGTGTCTATTGTAGGATTTTGCAACCACATAAAAGAGAAGATCACTGTGCACGAATACAATAGATCTCTACTTTACTACCTCCTAGATGAGGTTAGGGAAACACTGCCATGGAAAAAAAGGATAGAGATTTGCATAGGAGCAGCGCGTGGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAGCATCAATTCTGCCAGCATTCTTTTGGATGACAACATGCACCCAAAACTCTCAAGTTTCGGCCTTAGCATAATGGGAGCACATTTCAAAGAAAAGTCAAAACCAATACAAACGGATCTTGTAGGTAATTGTTCTTTAAGTATGTTATTGTATCGTAATACATTGATGAGATTCTTTGACTCCAAAGAACATAAGAGGATCGAGCTGCTGGAGGCCGACCTAGAGAAGGCCAAGAGGGAGTCAGCTGATGCAAGCAACCGCCTGACCGTCGCCCGGGACGATCATGAACGACTCCTGGAGGAGTGCAGCCAACTGAAGACGAAGGTCGCTCGTCAAAGAAGCTCTAAGGTCGGACTCCTCAAGTCAAACCAAGCTCTGATCGATGATCTCGCGAAGGCAAGGGAGAAGATATCTGAATTAGAGGCGGTCGATCTCAACTCCATGGCTGATGACGAGGGGCCGGAGACTGAAGGGCCCTCTGGTGCCGCGGGAGCTGACGAGACGGTGGAGGTCGAACATGACGATGAAGAGGCGAATGACGACGATAATTGA 1020 0.4529 CFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDHKRLIARGWVKVYKGCLQHIDGSDYAVTVRRFNVEDIEMFKREVELLCQLHHPNCVSIVGFCNHIKEKITVHEYNRSLLYYLLDEVRETLPWKKRIEICIGAARGLHYLHAGLKRTIIHRSINSASILLDDNMHPKLSSFGLSIMGAHFKEKSKPIQTDLVGNCSLSMLLYRNTLMRFFDSKEHKRIELLEADLEKAKRESADASNRLTVARDDHERLLEECSQLKTKVARQRSSKVGLLKSNQALIDDLAKAREKISELEAVDLNSMADDEGPETEGPSGAAGADETVEVEHDDEEANDDDN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4003g00001 339 MobiDBLite consensus disorder prediction 325 339 - -
Vium4003g00001 339 Gene3D Transferase(Phosphotransferase) domain 1 111 209 - -
Vium4003g00001 339 MobiDBLite consensus disorder prediction 297 339 - -
Vium4003g00001 339 Pfam Protein tyrosine and serine/threonine kinase 46 182 IPR001245 GO:0004672|GO:0006468
Vium4003g00001 339 Gene3D Phosphorylase Kinase; domain 1 4 110 - -
Vium4003g00001 339 ProSiteProfiles Protein kinase domain profile. 35 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4003g00001 339 Coils Coil 279 299 - -
Vium4003g00001 339 Coils Coil 216 264 - -
Vium4003g00001 339 PANTHER OS07G0166700 PROTEIN 19 195 IPR045272 GO:0004714|GO:0006468
Vium4003g00001 339 SUPERFAMILY Protein kinase-like (PK-like) 8 187 IPR011009 -
Vium4003g00001 339 FunFam Receptor-like protein kinase ANXUR2 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4003g00001 Vium-Chr4003 7 1348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4003g00001 4 182 Receptor kinase-like Gene Family AT3G51550 41.622 3.39e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4003g00001 PK_Tyr_Ser-Thr 2.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4003g00001 - - vum:124836406 644.039