Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4000g00001 ATGGCACAGGCAAGTGGGGCGGAGCAGGTTGGTCGGAGAGTACGTGTGGGGAGCAAATCCGGCGCGGTCGTTATCGGTGTGTGGCACGGAAGGCACAAGGTGCACGGAACCGAGGTGGCAATAAAGGAGATCGCCACGCTTCGCCTCAATAAGAAGTTGCAGGAGAGCCTCATGTCCGAAATTTTCATCTTGAAGCGGATTACACACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACAATCTTGGGTTAGATAGAATACTGTAAAGGGGGGAGATCTGGCCTTGTACATTCAACGCCCAGGGAAGGGTACAGAGGCAATGCAAAGCATTCAGCAGCCGCTGGCTGCTGGTCTACTAGTTCTTCGAGATAATAACCTTATTCATCGTGACCTGAACCCACAGAACCTTCTTCTCTCCCAGAATGATGAGAAGGCAGTACTGAAGATTGCTGACTTTGGATTTGCAAGGTCTCTGCAACCTAGGGGCCTTGCTGAAACCTTGTGTGGTTCACCACTCTATATGGCTCCAGAAATCATGCAACTACAGAAGTATGACGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTGGTTACAGGAAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATATTGAAATCGACAGAATTGCAGTTTCCATCTGATTGCCCAAGTCTGAGTTTTGAATGCAAAGATTTGTGTCAGAAATTGTTACGTCGGAATCCAGTGGAACGTCTAACTTTCGAAGAATTTTTTAACCACCCATTTCTTTCTCAGAAGCAAAGAGAACAGGATGATGAGCCATTGAGGAGTAGAAGTTCTTCAAGGCTGGTTGGTGGGTTTTTTTCTACAGTGTCTGACCCTTTGAGAAGAACTGAGGAAAATTATCAAGAAGATTGTTTGCCTTTCATCCTAGATGACGACTCTGGTGGCCCCGAGGGGAGTCCATCCTTTTCAAGAAAAAAGTCCTCAATAAAGTCCACCTATGGATTTGATCTAAATTCTAAATTAGATAAAGCAGAATCAACATCTCCTATCTCTAATAACATAAATTCTAATTCTGGATTTCGTACTATGACACAAAGATCTCAAAACACTAATAGGAGATTGGACAACCGTAACATTTCAAGAAATCTCACTGATCCTCTAGAATCTCCAGAACAGATGTTCGCAAATCCTTATCCAAAAGTTACGGATTCCCTGGAGAATATTGATCAAGAATATGTTCTGGTGCCAGGGCCCCCTATAGATGTTTCATCTTCTTCGGTGGGTGCTTCCAGGCCCAGCCATACCCCATATAGGTCTGGTAGTTTACCTCAAGAGTCTTCTAGTACAATCACCAGACCAAGTGCTCCAATGCCAATAGTTGGTGCCAATACAAATAGCATGTACCAAGTTGGAAGTTCAGGAAGTCAGGACTCTGCCCCTGGGACTTCGCTTGGATCGATGGATATAGGTGATGAACAGCCATCAGCTCACTGCATGACCCGGGTAAAATCATTGCAACAGTGTGCATCTGCCATCACCGAGTTAGTTAATGAAAAGATGGAGGCAGGAAAGCATCTGGAAGCGTTTTCTATTCAGCTTGTAATTCTTGCAATCTGGAAGCAAGCACTGCACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCAAGATATAGAAAGAGTGCCAGCAGGAAGCATGGCAGTCCTGATTCGGAAGAATGCCTTGATGGAAACACCCTATGGCCAAAGGATATTTTATCTAAAATTGAAAGTGAATTTTTGAGGGAATTTGAGCATGCTGAAGAGCTTGCCAAGACCATTGAGCCTGGAAACACTGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCCCTTGCTTTTGGAAGGCATGGGGGTGTAGAAGAACTCATGGGTGACATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTCCGTCTGTTAGTTTTTCTTCTAGTGGAAGGACCATCCCTGATTCTTAATCCTCCGTTTTCGCTGACAAACTCAGATCGTTACAGACTTCGAAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCCCAGCGAATGGCACTACTGAAATGTGATGACAGTCAAGTTATTCTTTTGAGGGGGGTGAAATTGGTGATGCTGATGGGAGTAAAGCAGCACAAAGTAGATTGTAAAATTCAACATTTCGGTGGTTAG 2268 0.4383 MAQASGAEQVGRRVRVGSKSGAVVIGVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRITHPNIICLHDIIQVPGKIQSWVRXNTVKGGDLALYIQRPGKGTEAMQSIQQPLAAGLLVLRDNNLIHRDLNPQNLLLSQNDEKAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELQFPSDCPSLSFECKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQREQDDEPLRSRSSSRLVGGFFSTVSDPLRRTEENYQEDCLPFILDDDSGGPEGSPSFSRKKSSIKSTYGFDLNSKLDKAESTSPISNNINSNSGFRTMTQRSQNTNRRLDNRNISRNLTDPLESPEQMFANPYPKVTDSLENIDQEYVLVPGPPIDVSSSSVGASRPSHTPYRSGSLPQESSSTITRPSAPMPIVGANTNSMYQVGSSGSQDSAPGTSLGSMDIGDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRKSASRKHGSPDSEECLDGNTLWPKDILSKIESEFLREFEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGDMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMALLKCDDSQVILLRGVKLVMLMGVKQHKVDCKIQHFGG 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4000g00001 755 SUPERFAMILY Protein kinase-like (PK-like) 27 278 IPR011009 -
Vium4000g00001 755 Pfam Protein kinase domain 27 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4000g00001 755 MobiDBLite consensus disorder prediction 575 589 - -
Vium4000g00001 755 MobiDBLite consensus disorder prediction 354 408 - -
Vium4000g00001 755 Gene3D Transferase(Phosphotransferase) domain 1 19 311 - -
Vium4000g00001 755 MobiDBLite consensus disorder prediction 433 493 - -
Vium4000g00001 755 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 15 642 IPR045269 GO:0004674|GO:0006914
Vium4000g00001 755 MobiDBLite consensus disorder prediction 354 399 - -
Vium4000g00001 755 FunFam Serine/threonine-protein kinase ATG1c 121 316 - -
Vium4000g00001 755 ProSiteProfiles Protein kinase domain profile. 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4000g00001 755 CDD STKc_ATG1_ULK_like 16 270 - -
Vium4000g00001 755 MobiDBLite consensus disorder prediction 426 503 - -
Vium4000g00001 755 MobiDBLite consensus disorder prediction 564 593 - -
Vium4000g00001 755 MobiDBLite consensus disorder prediction 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4000g00001 Vium-Chr4000 3297 17452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4000g00001 27 281 CBL-interacting serine-threonine protein kinases AT2G30360 35.338 2.01e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vium4000g00001 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4000g00001 K08269 - gmx:100791596 1203.73