Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3992g00002 ATGGTTCAACAGGAAGTGCGTAAAGGTCCATGGACAGAACAGGAAGATTTCAAACTGGTGTCGTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGATGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGTATCGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAAAGAGGAGAAGCTGCATCATCATCAACACCGACAAAACCATCTTGCAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAGCATGAAGTGGATCCACACGCTTCAAAAAAGGCAGGAGAAGAGAGCTTTTACGACACAGGAGGAGCTTCAACTCAAGATGAAGGTGAAGGTGAGTTCTCAATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTGTTTATGGAGAGAGTGAAGTGGGTTGCAACCCATCTGCATCATCGTGGGAGTATTGTTGTGACCATCTGTGGGTGATGATGGATGAGGAACCATATTTTTATGCATTAAGCGGCTAA 690 0.4362 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSSIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSTPTKPSCSVHSSISVSSKKHEVDPHASKKAGEESFYDTGGASTQDEGEGEFSMDDIWKDIDMSEENNSFVYGESEVGCNPSASSWEYCCDHLWVMMDEEPYFYALSG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3992g00002 229 Gene3D - 8 60 - -
Vium3992g00002 229 MobiDBLite consensus disorder prediction 138 154 - -
Vium3992g00002 229 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Vium3992g00002 229 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vium3992g00002 229 Gene3D - 63 124 - -
Vium3992g00002 229 SMART sant 7 57 IPR001005 -
Vium3992g00002 229 SMART sant 60 108 IPR001005 -
Vium3992g00002 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vium3992g00002 229 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Vium3992g00002 229 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vium3992g00002 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vium3992g00002 229 CDD SANT 63 106 IPR001005 -
Vium3992g00002 229 FunFam Myb transcription factor 8 60 - -
Vium3992g00002 229 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vium3992g00002 229 CDD SANT 10 55 IPR001005 -
Vium3992g00002 229 MobiDBLite consensus disorder prediction 117 137 - -
Vium3992g00002 229 MobiDBLite consensus disorder prediction 111 171 - -
Vium3992g00002 229 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 164 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium3992g00002 229 FunFam MYB transcription factor 63 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3992g00002 Vium-Chr3992 10511 18827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3992g00002 1 221 MYB Transcription Factor Family AT5G59780 58.621 3.32e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3992g00002 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3992g00002 K09422 - qsa:O6P43_028279 295.049