Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3986g00002 ATGAGGAAAAGGGAGAGAGAGAATCCCTGTGGGGTGTGTGGCCACTACCACAAATATGAAGAAGGGGAAGTGTGTTCCATTTGCGGTCACCGGATTCCAGTTGGATCGGAGAAAACTTCGATACAAGTTAGTGCTTTTCCTTCTGTGATTCTGCCCGAATTTCTTTACCTAGGAAGCTATGACAACGCATCACGTTCCGAGCTTCTCAAGACACAGGGGATTACTCGTATCCTCAATACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGGCATTTGATGAAGCAATTCAGTTTCTAGGTATTTTTCTGTTTGTCCATTTAAAACTTATACTTTTCATTTGCCCAGGTGCTTGTTTAACACGGATTAGCTGTTTT 414 0.4203 MRKRERENPCGVCGHYHKYEEGEVCSICGHRIPVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNTVPSCQNLYKNSFTYHCLPDDKTLAFDEAIQFLGIFLFVHLKLILFICPGACLTRISCF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3986g00002 138 Gene3D Protein tyrosine phosphatase superfamily 40 122 IPR029021 -
Vium3986g00002 138 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 113 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vium3986g00002 138 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 119 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3986g00002 Vium-Chr3986 12504 14419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3986g00002 1 112 Protein tyrosine phosphatase (PTP) family AT2G04550 74.783 8.49e-62 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3986g00002 K04459 - gmx:100808721 233.417