Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3986g00001 ATGAGGAAAAGGGAGAGAGAGAATCCCTGTGGGGTGTGTGGCCACTACCACAAATATGAAGAAGGGGAAGTGTGTTCCATTTGCGGTCAACGGATTCCAGTTGGATCGGAGAAAACTTCGATACAAGTTAGTGCTTTTCCTTCTGTGATTCTGCCCGAATTTCTTTACCTAGGAAGCTATGACAACGCATCACGTTCCGAACTTCTCAAGACACAGGGGATTACTCGTATCCTCAATACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGGCATTTGATGAAGCAATTCAGTTTCTAGAGTTATGTGAGAAGGAAAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTCCAAAGGATGGAGACTTGCACAGAGTTATCAGTGGGTAAAGGAACGTAGACATTCGGTTGAACTAACTCCTGGTGTATACCAGCAAACTACAAGAGTATGA 531 0.4331 MRKRERENPCGVCGHYHKYEEGEVCSICGQRIPVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNTVPSCQNLYKNSFTYHCLPDDKTLAFDEAIQFLELCEKEKERVLVHCMSGKSRSPAIVIAYLMKSKGWRLAQSYQWVKERRHSVELTPGVYQQTTRV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3986g00001 176 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 176 IPR020422 GO:0006470|GO:0008138
Vium3986g00001 176 Pfam Dual specificity phosphatase, catalytic domain 55 168 IPR000340 GO:0008138|GO:0016311
Vium3986g00001 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 172 IPR029021 -
Vium3986g00001 176 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Vium3986g00001 176 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Vium3986g00001 176 SMART dsp_5 46 173 IPR020422 GO:0006470|GO:0008138
Vium3986g00001 176 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 172 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vium3986g00001 176 FunFam Protein-tyrosine-phosphatase IBR5 36 176 - -
Vium3986g00001 176 Gene3D Protein tyrosine phosphatase superfamily 40 175 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3986g00001 Vium-Chr3986 2109 9136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3986g00001 1 167 Protein tyrosine phosphatase (PTP) family AT2G04550 73.529 3.49e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3986g00001 K04459 - gmx:100808721 339.732