Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00031 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAACTCCATCACGATTCAGAGGACCAAGAGACGCCGCCACACAACCGTGGAGGGGTGCCGTTCGATGACGATGACCGAAGCCAAGGATTGGAACTAGCTTCCTCGGGTCCCGGTGATGTCGTCGGTCGGCGTCCACGTGGAAGGCCACCGGGATCCAAGAACAAGCCGAAGCCGCCGGTGATAATCACGCGGGAGAGCGCCAACACTCTCCGAGCGCACATCCTCGAGGTCGGAAGCGGCTCCGACATATTCGACTGCGTCACCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTCCGCCAGCCGGCCGCTGCTGGCGCCGTCGTCACGCTCCACGGTCGCTTCGAGATTCTTTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCGCCTGGGGCTACCAGCCTCACTATCTATGTGGCCGGAGGGCAGGGCCAGGTTGTCGGAGGAAACGTGGTTGGAGAGCTGACCGCAGCGGGGCCGGTGATCGTCATCGCGGCGTCGTTCACGAACGTAGCCTACGAGAGGCTACCGTTAGAAGAAGAAGAACAGCTTCAGATTCAGGCACCCCCTACGACGTCGTCTCACGGAGTTGGAAATAACAACGGCAACAATAGCAATAACAACTCTTTCCCTGACCCTTCTTCGGGACTTCCCTTCTTCAATTTACCTCTGAATATGCAGAACGTTCAGTTACCCGGTGAGGGTTGGGGGGGAAACGCTGCTTCACGTCCACCACCTTTTTGA 858 0.5967 MAGLDLGSASRFVQNLHRPDLHLQQLHHDSEDQETPPHNRGGVPFDDDDRSQGLELASSGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDIFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYVAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQAPPTTSSHGVGNNNGNNSNNNSFPDPSSGLPFFNLPLNMQNVQLPGEGWGGNAASRPPPF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00031 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 259 IPR014476 GO:0003680
Vium3983g00031 285 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Vium3983g00031 285 MobiDBLite consensus disorder prediction 223 254 - -
Vium3983g00031 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Vium3983g00031 285 MobiDBLite consensus disorder prediction 220 254 - -
Vium3983g00031 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 224 - -
Vium3983g00031 285 PIRSF ESCAROLA 7 284 IPR014476 GO:0003680
Vium3983g00031 285 ProSiteProfiles PPC domain profile profile. 91 228 IPR005175 -
Vium3983g00031 285 MobiDBLite consensus disorder prediction 29 85 - -
Vium3983g00031 285 MobiDBLite consensus disorder prediction 29 53 - -
Vium3983g00031 285 Gene3D - 94 229 - -
Vium3983g00031 285 CDD DUF296 95 170 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00031 Vium-Chr3983 328955 330526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00031 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.541 2.06e-104 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00031 - - pvu:PHAVU_003G230600g 473.011