Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00029 ATGGACGCTCGCGAACCGCCCCGACCACAGCCGCCCTCCATCATGGGGGGCCCCACCTCATATGCCCCCCCCAACATCGGCCCTAATTCGTCCGGTGCCGTCATGATGGCGCCCGCCACCGCGCGATTTCCCTTCGGCGTCGTGCCGCCGCCGCAACAACATCCTCCGCCAGTGTCGGAGCCTTTCCCTGTCTCCCCCGCAGCCGCTTACGACGGCTCCTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAGCGCGGTCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCTACCCATGCTTCTCCTCCTCCACCTTCCTCCGCCGCCGCTTCCGGCGGCGGAATAGGTGGCGAGTCGGCCGGTACTGCCTCCGCCGATGCTCCGGCGAAGAAACACCGAGGAAGGCCTCCCGGGTCTGGGAAGAAACAGCTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACGGCAAAAATTATGTCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTCTCCGCTATTGGTGCAATCTGTAATGTTACCCTTAGACAACCTGCACTATCTGGTGGTACGGCAACATACGAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAACAGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCGGCATCAACTGTACAGGTCATAGTTGGTAGCTTTATTGTGGATGGAAAAAAGGCGAACTCGAATGTCCTCAAATCTGGGCCTTCTTCTGCACCACCACCCCAAATGCTAACATTTGGTGCACCCATGACTCCAACTAGTCCTACTTCACAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTAGAGGGCCTGGGTCTGGGCCTGGACCTGGACCTGGACCTGGACTCTACAACAATACTAGTCAGCCCATGCATAATATGCCCATGTACCATCATCCGCTATGGGCTGGCCAAACTCATCAGTGA 1119 0.5684 MDAREPPRPQPPSIMGGPTSYAPPNIGPNSSGAVMMAPATARFPFGVVPPPQQHPPPVSEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPSSAAASGGGIGGESAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMSFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNSERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKANSNVLKSGPSSAPPPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGSGPGPGPGPGLYNNTSQPMHNMPMYHHPLWAGQTHQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00029 372 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vium3983g00029 372 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Vium3983g00029 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Vium3983g00029 372 CDD DUF296 163 277 IPR005175 -
Vium3983g00029 372 MobiDBLite consensus disorder prediction 305 320 - -
Vium3983g00029 372 MobiDBLite consensus disorder prediction 288 372 - -
Vium3983g00029 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Vium3983g00029 372 MobiDBLite consensus disorder prediction 1 155 - -
Vium3983g00029 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 326 IPR039605 GO:0003680
Vium3983g00029 372 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
Vium3983g00029 372 MobiDBLite consensus disorder prediction 1 18 - -
Vium3983g00029 372 Gene3D - 164 289 - -
Vium3983g00029 372 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00029 Vium-Chr3983 309263 314397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00029 83 372 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.371 2.24e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00029 - - gmx:100789717 519.62