Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00026 ATGCCAGTTCCACTTGCTCCCTACCCTGCACCACCAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTAGTCTGTTCTGGATGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCGGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGAGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCGTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCAGTGTAATCTCTTGTCCCTGCCTAACTAGATTTTCTTTTAACTTTCTTTAG 453 0.4768 MPVPLAPYPAPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASVISCPCLTRFSFNFL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00026 150 PANTHER PROTEIN LSD1 16 55 IPR040319 -
Vium3983g00026 150 Pfam LSD1 zinc finger 67 91 IPR005735 -
Vium3983g00026 150 Pfam LSD1 zinc finger 28 52 IPR005735 -
Vium3983g00026 150 Pfam LSD1 zinc finger 105 129 IPR005735 -
Vium3983g00026 150 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Vium3983g00026 150 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Vium3983g00026 150 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00026 Vium-Chr3983 269103 270960 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vium3983g00026 zf-LSD1 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00026 - - tcc:18606063 256.144