Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00025 ATGGCTGGAGCAGTTGGCATGCCTGAGCAGGAGACACCGATTTTTTCCGGCAACAATGTCCGTCCAAGGTTGGATGTCTATGTTTGGGACATGGATGAGACGCTTGTACTACTCAACTCCTTGCTGAAATCATCATACGCAGAGGCTTTTAACGGTCTGAAGGATGTGCAGAAGGGAGTTGAAATCGGGAGGATGTGGGAAAATCTCATTCTACAAACATGTGATGATTATTTCTTCTATGAACAAATTGAAAATTACAATAAACCATTTCTTGATGCTCTGGCCCAATATGACGATGGGAGCGACTTATCTGATTATGACTTCAACAAAGATGAATTAGGTGCCCCTCAAGATGATGCCAACAAAAGAAAACTTGCATATAGGCACCGAGTCATTGCCCAAAAGTACATACAGGGTTTACAGAATATTTTAGATCAAGAGACAATAAAACACTGGGATGAATTGTATGATAAAACTGATGAATACACTGACAGGTGGCTTTCATCAGCACGAACCTTTTTGAAGGAGTGTTTGGGTGAAGATGAAGATGCAGTTTCTTCAATTACTTCTTCTGATACCAGCTATAACTCAACTAATGTAAAGCATGTTAATGTTTTAGTGACCTCTGGATCGTTAATTCCCTCACTTGTGAAATGCCTGCTCTTTCGTCTGGACAGCTTGATAAGCCATGGAAATGTTTATAGTTCATGGGAAGTGGGAAAAATTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCTAATGTTCGCTTTTGTGTATTTGGAGATGGATGGGAAGAGTGTGAAGCTGCAGAAATCATGAGATGGCCATTTGTTAAGATTGATCCACGGCCAGGAAAACTTCACAGGTTCCCTGGTCTTACTTTGACAACAGTTAGCCACTACTTTTCTGTGGTGTATGGAAGGCCAAACAATGAGAATGAAGATGGTTGA 957 0.4107 MAGAVGMPEQETPIFSGNNVRPRLDVYVWDMDETLVLLNSLLKSSYAEAFNGLKDVQKGVEIGRMWENLILQTCDDYFFYEQIENYNKPFLDALAQYDDGSDLSDYDFNKDELGAPQDDANKRKLAYRHRVIAQKYIQGLQNILDQETIKHWDELYDKTDEYTDRWLSSARTFLKECLGEDEDAVSSITSSDTSYNSTNVKHVNVLVTSGSLIPSLVKCLLFRLDSLISHGNVYSSWEVGKIQCFRWIKERFNHPNVRFCVFGDGWEECEAAEIMRWPFVKIDPRPGKLHRFPGLTLTTVSHYFSVVYGRPNNENEDG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00025 318 Gene3D - 25 292 IPR038102 -
Vium3983g00025 318 PANTHER EYES ABSENT 24 304 IPR028472 GO:0004725
Vium3983g00025 318 FunFam Eyes absent homolog 25 292 - -
Vium3983g00025 318 NCBIfam EYA conserved domain 25 300 IPR006545 GO:0007275
Vium3983g00025 318 SUPERFAMILY HAD-like 23 290 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00025 Vium-Chr3983 249292 254586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00025 24 315 Protein tyrosine phosphatase (PTP) family AT2G35320 61.224 1.30e-136 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00025 - - gmx:100791661 583.948