Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00024 ATGGCTGGAGCAGTTGGCATGCCTGAGCAGGAGACACCGATTTTTTCCGGCAACAATGTCCGTCCAAGGTTGGATGTCTATGTTTGGGACATGGATGAGACGCTTGTACTACTCAACTCCTTGCTGAAATCATCATACGCAGAGGCTTTTAACGGTCTGAAGGATGTGCAGAAGGGAGTTGAAATCGGGAGGATGTGGGAAAATCTCATTCTACAAACATGTGATGATTATTTCTTCTATGAACAAATTGAAAATTACAATAAACCATTTCTTGATGCTCTGGCCCAATATGACGATGGGAGCGACTTATCTGATTATGACTTCAACAAAGATGAATTAGGTGCCCCTCAAGATGATGCCAACAAAAGAAAACTTGCATATAGGCACCGAGTCATTGCCCAAAAGTACATACAGGGTTTACAGAATATTTTAGATCAAGAGACAATAAAACACTGGGATGAATTGTATGATAAAACTGATGAATACACTGACAGGTGGCTTTCATCAGTGACCTCTGGATCGTTAATTCCCTCACTTGTGAAATGCCTGCTCTTTCGTCTGGACAGCTTGATAAGCCATGGAAATGTTTATAGTTCATGGGAAGTGGGAAAAATTCAATGTTTCCGATGGATCAAGGAGCGTTTCAACCATCCTAATGTTCGCTTTTGTGTATTTGGAGATGGATGGGAAGAGTGTGAAGCTGCAGAAATCATGAGATGGCCATTTGTTAAGATTGATCCACGGCCAGGAAAACTTCACAGGTTCCCTGGTCTTACTTTGACAACAGTTAGCCACTACTTTTCTGTGGTGTATGGAAGGCCAAACAATGAGAATGAAGATGGTTGA 846 0.4184 MAGAVGMPEQETPIFSGNNVRPRLDVYVWDMDETLVLLNSLLKSSYAEAFNGLKDVQKGVEIGRMWENLILQTCDDYFFYEQIENYNKPFLDALAQYDDGSDLSDYDFNKDELGAPQDDANKRKLAYRHRVIAQKYIQGLQNILDQETIKHWDELYDKTDEYTDRWLSSVTSGSLIPSLVKCLLFRLDSLISHGNVYSSWEVGKIQCFRWIKERFNHPNVRFCVFGDGWEECEAAEIMRWPFVKIDPRPGKLHRFPGLTLTTVSHYFSVVYGRPNNENEDG 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00024 281 PANTHER EYES ABSENT 24 267 IPR028472 GO:0004725
Vium3983g00024 281 Gene3D - 25 255 IPR038102 -
Vium3983g00024 281 SUPERFAMILY HAD-like 23 251 IPR036412 -
Vium3983g00024 281 NCBIfam EYA conserved domain 25 169 IPR006545 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00024 Vium-Chr3983 249267 254586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00024 24 278 Protein tyrosine phosphatase (PTP) family AT2G35320 59.091 1.90e-125 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00024 - - gmx:100799315 514.998