Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00021 ATGGGTTGCACCATGAGGGAAAAACACATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCGGACACGGATTCTTGCGACAAGGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAGATACCATACGGCTTCCAATGATTCTTCCCCAAGCCTAAATTCAAACCCTAATGTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAGCAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTCTCGAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTTCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCCTTGGCGTATTTAAATAGTAATAGTGATGGTGGTGGTGGGAAGATGGATGAGACTGAGCCTGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCCGCTTTGGTGTGTTTGGTTCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTGCAATGGATATTCCTGTGCCAGGCACTGGGAACCCTGCTCCGGCTTCAGGTGAGAGTTGTGGCAATTCGGTTGGTGTTATGGGGCCGGCTTTTTGTAGGTTTCACGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTGGAGTTTCCTGTAAATGGGGTATTCTCTTGCGGGACAGAGATGAATTTGCAGCTACAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTGTCTCCTTCAATGAAGGCCTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTACAGACGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACATAGTTTGGATTCTTTTGCTGCGATCGGGACAGGAGACCCGGCTGATCAATCTAGAGGAGATTCACAGAATGTCGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTCATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCAATGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCAGCTAGAAAGCTAAGTAGTGATCTAACTGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCATTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCTAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCGGAGACACAAGAAATGTTGGTTCAGATTAGACAGTGTCAACAGGAGGCTGAGGTGAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGCAGTAGTTGAAGAGGAACGGCGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGTCACAAGGATGATCTACTAAGATTGGAACAGGAACTTTCGCGCCTTAAAGCCTCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCCACAAGCGACTCTGAGGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAACCTGGACGATTTTTCAGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCGGTGATGAGTATGGAAGAAAAGGTAAGGCTGCTTGTCCCTGCTGCAGGGTTCAAATTCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2133 0.4562 MGCTMREKHIRANRRPRSAKPDTDSCDKDAISKSIAESGLKPFRYHTASNDSSPSLNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGGKMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIPVPGTGNPAPASGESCGNSVGVMGPAFCRFHGGWGFGNGGGLEFPVNGVFSCGTEMNLQLQRDIEFPKRFNLSPSMKALLKRNVAMFAAGFRANSKQLQTQAKTISGRSTAHSLDSFAAIGTGDPADQSRGDSQNVDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVNERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQCQQEAEVKWKEELKAKEEALAVVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSDSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCGDEYGRKGKAACPCCRVQIQQRIRVFGASS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00021 710 MobiDBLite consensus disorder prediction 605 627 - -
Vium3983g00021 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 707 IPR013083 -
Vium3983g00021 710 PANTHER OS05G0141500 PROTEIN 1 705 IPR046934 -
Vium3983g00021 710 Coils Coil 584 611 - -
Vium3983g00021 710 CDD RING-HC_MIP1-like 651 705 - -
Vium3983g00021 710 SUPERFAMILY RING/U-box 637 702 - -
Vium3983g00021 710 Coils Coil 436 477 - -
Vium3983g00021 710 Coils Coil 492 526 - -
Vium3983g00021 710 MobiDBLite consensus disorder prediction 317 336 - -
Vium3983g00021 710 Coils Coil 538 568 - -
Vium3983g00021 710 ProSiteProfiles Zinc finger RING-type profile. 656 696 IPR001841 -
Vium3983g00021 710 Pfam Family of unknown function (DUF6592) 82 197 IPR046527 -
Vium3983g00021 710 MobiDBLite consensus disorder prediction 1 28 - -
Vium3983g00021 710 Pfam Zinc finger, C3HC4 type (RING finger) 653 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00021 Vium-Chr3983 233988 240036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00021 642 706 C3H Transcription Factor Family AT1G73950 34.783 2.76e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00021 - - gmx:100777787 1182.16