Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00020 ATGGGAGGGGCAACACTGCCGCCAGGATTTCGTTTCCATCCAACTGATGAGGAACTAGTGGGATACTACCTTAAAAGAAAAGTAGAAGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATCGATTTTTACAAATTCGATCCCTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACCGGAAAAGACAGAAAGGTGGTGTGCCAGTCTGATCCATCCAATGTTACTGGGTACCGCAAGACCTTGGTTTTCTATGCTGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAACCCACACCTTCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAAGCAAGTGCTACGAAGGGAGAAAACAAGGGCAAAAGGGCTGCAAGCAGTTCCATTAATGGGAGTGACACCTCAGTGAGATTCTCTGGTGAGCCATTCAGCAACTCTGGTGATTCTTCCTCTCATGCAAGCCAACTGAATAATGAGAGTCGTTATTCAAGCCCAATTACTTCTCCATACAATGTGGCTCCAATGGGAGAAATTAACCAAGCTTCTCTGGAAACCGATCCTTCAAACTTCTGGATCTCCCCGGACATGATTCTTGATTCTTCAAAGGACTACCCTCAATTACAGCATGCTGTATCTGAATATTTTCCACGGTATGACTTACCATGTATGGGGACACAATGGCAATCAGTTGAACATTCAGAAACTCCATCTAGTTTCTCCTACTCAAATGTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATTGGCGGCATGTCACCTTACTCAAGAGAATGGAATTCCATGGACTTCTATGGAAATGGAGATGTCCCTTATGAAGATTATGATCAAATTAACTCAATCTCATATCCATGA 1032 0.4428 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSDPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRLCDDLGQPTPSFQGGFALCRVIKKNEKASATKGENKGKRAASSSINGSDTSVRFSGEPFSNSGDSSSHASQLNNESRYSSPITSPYNVAPMGEINQASLETDPSNFWISPDMILDSSKDYPQLQHAVSEYFPRYDLPCMGTQWQSVEHSETPSSFSYSNVNGEVEFADTLSQIGGMSPYSREWNSMDFYGNGDVPYEDYDQINSISYP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00020 343 MobiDBLite consensus disorder prediction 171 220 - -
Vium3983g00020 343 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Vium3983g00020 343 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Vium3983g00020 343 FunFam Nac domain-containing protein 86 15 162 - -
Vium3983g00020 343 MobiDBLite consensus disorder prediction 163 220 - -
Vium3983g00020 343 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vium3983g00020 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 214 - -
Vium3983g00020 343 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00020 Vium-Chr3983 222897 225622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00020 1 300 NAC Transcription Factor Family AT4G17980 55.592 8.16e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3983g00020 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00020 - - gmx:100792714 623.239