Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00015 ATGGGAAGTGGAGTTTCAACCCTCTGTTGGTGCTACGGGAGGAACCAACCGGCCGACCACCATGTCCTATTCAAGGCCACGGACCCATTGGACGAAACCCTAGGGCACTCCTTCTGTTACGTCAGATCCTCCGCTCGCTTCCTCTCACCTACTCACTCCGATCGCTTCCTCAGCCCCTCCACCTCCCTCCGCTTCTCTCCCACTCATGAGCCTCGAACCCGACCCGAATCCCATGAAACCGGCTTCAAAGCCATTTCCGGGGCCTCCGTCAGCGCCAACAGCTCTCTCCCCACTACGGTCATTCACTTTGACGAAGACACCCTCGATTGCGTCGGAGCTACCACCAAGGGCAATATCGTCAATGGCTTCGAAAGCACGGCTTCGTTTACCGCGCTCCCGCTCCAGCCCGTTCCCCGAGGCGGCGAGCCCTTCCAGGTCAGCGGCTTCTTCCTCTCCGGTCCAATCGAAGCCAACGCCGTCTCCGGTCCTCTACCCGCCGCCGAAGGCGGCGGCGGCGGTGACGTTCCCTTCTCTGCGCCGCTCAGCGGGCTCTACGGAAAGAAGAGCAGGAAGAAGAAGGTGATTTCGGGATTCCGGAAGGCGTTCAATCGGAACGCCACGGAGATGAAGAGGCCGTGGGTGGTGCCGGTGCCGGAGAAGAAGGAGGCGGCGGCGGCGGAGGCGAGGGGCGGTGAGGGCAATGTGCAGTGGGCGTTGGGAAAGGCTGGGGAGGATCGCGTCCATGTGGTGGTGTCGGAGGAGCAAGGGTGGTTGTATGTTGGGATTTACGACGGTTTCAATGGCCCAGACGCGCCGGAGTTTCTGATGGGGCACCTCTACCGTGCCGTTCACAGCGAGCTACAAGGCTTGTTCTGGGAGCTGGAAGACGAACAACCGTTGCCGCAAGAGAGTAATCCCGTGGTGGAAGGAACGCAGAGTAAACGGCGTAAACTGTGGGAGCTTCTCGCTGAGGACGGACTCGACCTTTCTGGTTCGGATAGGTTTGCGTTTTCCGTGGACGATGCGTTGAGCGTTAACAACGCCAATGCGGGGTCTGCTGTGAGTAGGAGGTGGTTGTTGCTGTCGAAGTTGAAGCAGGGGTTATCGAAGCAGAAGGAGGGTGAAAGGAGGGGGTGGAATTTGGGTAATGAGGAGAAGGAAAAGGAGAAGCCGTCTGGGAGGAAGCGGAAGGTGGGTCCTGTGGATCATGGACTTGTTTTGAGTGCGTTGTCTCGGGCACTTCAAGTCTCGGAGGTTGCGTATTTGGATATGACGGATAAGCTTCTGGATACGAATCCGGAGCTTGCTTTAATGGGTTCGTGTTTGTTGGTTGTGTTGATGAGGGATGAGGATGTGTATGTGATGAATGTTGGGGATAGTAGGGCTATTGTTGCACACTATGAACCAAAGGATGTCGATTCTACTGTTGAATCGGGAAGCAAGGGAGGTGTTGTGTCCGGTGCTGAGTGCATAGTTGAGGAGTCATTGTGTTTAGGTCAAAGTGAAAATGCTCAACAAATGAGGTTGGCGGCGTTGCAACTCTCTACTGACCACAGCACCAGCATTGAAGAAGAAATCATTAGGATTAAAAACGAGCATCCTGATGATACCCAATGTATAGTCAATGACAGAGTCAAAGGTCGCCTGAAGGTCACCAGAGCATTTGGGGCTGGATTTTTGAAACAGCCGAAGTTAAATGATGCGGTACTAGAGATGTTTCGAAATGAATATATTGGCACTGCTCCGTATATTTCATGCTCTCCTTCACTACGTCACCACAGATTATGCCAGAGAGATCAGTTCCTGATCCTTTCATCTGATGGTTTATATCAATATCTAAACAATGAAGAAGTGGTTTCTCATGTTGAGAGCTTCATGGAAAAATTTCCTGAAGGAGATCCAGCCCAACATTTAATAGAAGAGGTGCTTCTCCGTGCAGCTAAGAAAGCTGGAATGGATTTTCATGAATTGCTTGATATACCACAAGGAGATCGGAGGAAGTATCACGATGATGTTACTGTCATGGTAATTTCACTTGAAGGGAGAATCTGGAAATCGTCAGGAAAATATCCGTGA 2076 0.526 MGSGVSTLCWCYGRNQPADHHVLFKATDPLDETLGHSFCYVRSSARFLSPTHSDRFLSPSTSLRFSPTHEPRTRPESHETGFKAISGASVSANSSLPTTVIHFDEDTLDCVGATTKGNIVNGFESTASFTALPLQPVPRGGEPFQVSGFFLSGPIEANAVSGPLPAAEGGGGGDVPFSAPLSGLYGKKSRKKKVISGFRKAFNRNATEMKRPWVVPVPEKKEAAAAEARGGEGNVQWALGKAGEDRVHVVVSEEQGWLYVGIYDGFNGPDAPEFLMGHLYRAVHSELQGLFWELEDEQPLPQESNPVVEGTQSKRRKLWELLAEDGLDLSGSDRFAFSVDDALSVNNANAGSAVSRRWLLLSKLKQGLSKQKEGERRGWNLGNEEKEKEKPSGRKRKVGPVDHGLVLSALSRALQVSEVAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYEPKDVDSTVESGSKGGVVSGAECIVEESLCLGQSENAQQMRLAALQLSTDHSTSIEEEIIRIKNEHPDDTQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDAVLEMFRNEYIGTAPYISCSPSLRHHRLCQRDQFLILSSDGLYQYLNNEEVVSHVESFMEKFPEGDPAQHLIEEVLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00015 691 Pfam Protein phosphatase 2C 512 648 IPR001932 -
Vium3983g00015 691 PANTHER PROTEIN PHOSPHATASE 2C 220 678 IPR015655 GO:0004722|GO:0006470
Vium3983g00015 691 SMART PP2C_4 228 677 IPR001932 -
Vium3983g00015 691 CDD PP2Cc 402 679 IPR001932 -
Vium3983g00015 691 MobiDBLite consensus disorder prediction 59 79 - -
Vium3983g00015 691 Gene3D - 218 686 IPR036457 -
Vium3983g00015 691 SUPERFAMILY PP2C-like 241 680 IPR036457 -
Vium3983g00015 691 ProSiteProfiles PPM-type phosphatase domain profile. 222 679 IPR001932 -
Vium3983g00015 691 MobiDBLite consensus disorder prediction 372 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00015 Vium-Chr3983 195637 200568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00015 1 690 PP2C-type Phosphatase Gene Family AT2G35350 54.806 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00015 - - gmx:100781535 1137.48