Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00012 ATGGGTTGCCTACACTCCAAAACCGCTCATCTTCACTCTCCTGAAGACCCTCCCACTGCCTTGCCAGACTCAAAAAAACCCGATCCAGGGAATGGTGGGGATGATGTTGATCAAGAGGTTCAGGTTCCAGCATTCAAAGAGTACGGTCTGAGTGAACTTCGAAGGGCCACAAATGAGTTCAACACAGATTACATTGTTTCTGAGAGTGGGGAGAAAGCCCCCAATGTGGTCTACAGAGGGAAGCTAGAGAACAATCGTTTAGTTGCTGTGAAGCGGTTCTCAAAACTGTCTTGGCCTGATGCTCAACAGTTTATGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAGACTGGTGAATCTAATTGGCTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGACACTTTGTCCAAACATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTAAGAGTTGCGTACCATGTTGCGCAGGCACTAGATCATTGCAGTATGGAAAACCGGAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGGATGGTGATCCCCGCTTGTCTAGTTTTGGGCTTATGAAAAATAGTCGAGACGGGAAAAGCTACAGTACCAATTTAGCTTACACTCCACCTGAATTTTTGAGAACAGGCAGGATAATCCCGGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCATATTCCCCCTAGCCATGCTTTGGACCTGATTAGAGGGAAGAATGTTTTGTTGTTGATGGACTCTTCCCTCGAAGGGCAATATGCGAATGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGAAATTAAGTTTCTTCTTACTTCCGTTACACCTCTTCAGAAGCAAAAAGAGGTAGCATCTCATGTGTTGATGGGCCTAACTAAAAACACAGCAGTGCTACCAACGATGCTTTCTCCCCTTGGAAAGGCTTGTGCAAGAATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGAGCAGAAAATGAGCTTTCATTCCAAGAATGGACACAGCAAGTGCAAGATATATTGAACACTAAAAAGTTTGGGGATATTGCATTCAGGGACAAGGATTTCAAAAATGCTATTGAGTACTATTCAAAGTTGGTGGTTATGATGTCTGTTCCCTCTGCTACTGTGTTTGCAAGAAGAGCCTTCTCCTACTTGATGAATGATCAAGCAGAACTTGCATTAAGGGATGCCATGCAGGCACAGGTATGCATACCTGATTGGCCAACTGCATTCTATCTGCAGGCTCTGGCTCTCTCGAAGCTGGGAATGGAAACTGATGCACATGACATGCTCAATGATGGGGCTGCTTTTGAAGCAAAGAGGTCTAACAGCTGGCGTGGTTAA 1491 0.442 MGCLHSKTAHLHSPEDPPTALPDSKKPDPGNGGDDVDQEVQVPAFKEYGLSELRRATNEFNTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQFEARERPEIKFLLTSVTPLQKQKEVASHVLMGLTKNTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAHDMLNDGAAFEAKRSNSWRG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00012 496 SUPERFAMILY TPR-like 387 485 IPR011990 GO:0005515
Vium3983g00012 496 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Vium3983g00012 496 FunFam probable serine/threonine-protein kinase At4g35230 35 138 - -
Vium3983g00012 496 Pfam Protein tyrosine and serine/threonine kinase 76 311 IPR001245 GO:0004672|GO:0006468
Vium3983g00012 496 MobiDBLite consensus disorder prediction 1 38 - -
Vium3983g00012 496 SUPERFAMILY Protein kinase-like (PK-like) 51 315 IPR011009 -
Vium3983g00012 496 Gene3D Tetratricopeptide repeat domain 386 495 IPR011990 GO:0005515
Vium3983g00012 496 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
Vium3983g00012 496 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 491 IPR045845 GO:0004672|GO:0009742
Vium3983g00012 496 FunFam probable serine/threonine-protein kinase At4g35230 386 495 - -
Vium3983g00012 496 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3983g00012 496 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00012 Vium-Chr3983 165009 170106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00012 14 314 Glycoside Hydrolase AT3G07070 33.538 1.38e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium3983g00012 PK_Tyr_Ser-Thr 6.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00012 K14500 - gmx:100793576 991.104