Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3983g00006 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGAAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCGAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACAATTATGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAACTCAGAAATATCTGGCAGCATGTTGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAACATGAAAGTAGAGTGTCCATTGATATAGAGAAAGTATCCAGGTTTACTGATAATGATGATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGACAATATTGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTACCTAGGGAGGAAGTGAATTTAGTTGACGCTTCCAAGGTTGAGAGTATTGCCTCTCTACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACAAAATCTGCAAATAAAGTAGGCGTTCTTAGTGATTCATGCGAGATAAAGCCAAGACGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCAAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATCATGGCCTTTCCTCCATATCATTCTAATCACACCCATACTATGGCTCCTATATATCCTAAGTGGGGACAACCTAGCACTCAAACGGCTGGCATGCATATGTGGAGCACTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGTTTCCAGGGATGCATGCAGATTCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTACTCTAAGAATATGCCTGCGTTGCTCAATGCTGATGCAACAGGTCACACTTTTACCATGCCACAAAGTTCCTTAGAGAATTATCCGGTATGCAACACTTTCGGTTTTTTTGTCTCATGGAAGTGTTCTGCATTTTCTGTTGGCTATTTAGGAGCTGTTTACCATTTGAACAAAATTGAGTCTCCTGGCCAACTGAATCAAGCTTGTGATCTCATGGTTGTGCTGAAGGAATTGGACTTCGATAAGCGGTATTAA 1674 0.4223 MVFTANDLQEWKDFPKGLKVLLLEEDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQHESRVSIDIEKVSRFTDNDDVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCDNIAETESTPQERKSDMTLPREEVNLVDASKVESIASLHTQKRKVLSNPDKNTKSANKVGVLSDSCEIKPRRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPYHSNHTHTMAPIYPKWGQPSTQTAGMHMWSTPGYPLWQPTAEHWHWKPFPGMHADSWGCPVLPVPPPQAPFPYSKNMPALLNADATGHTFTMPQSSLENYPVCNTFGFFVSWKCSAFSVGYLGAVYHLNKIESPGQLNQACDLMVVLKELDFDKRY 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3983g00006 557 MobiDBLite consensus disorder prediction 183 259 - -
Vium3983g00006 557 SMART REC_2 18 128 IPR001789 GO:0000160
Vium3983g00006 557 Gene3D - 312 373 - -
Vium3983g00006 557 Gene3D - 18 139 - -
Vium3983g00006 557 SUPERFAMILY Homeodomain-like 314 372 IPR009057 -
Vium3983g00006 557 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vium3983g00006 557 FunFam Two-component response regulator 311 373 - -
Vium3983g00006 557 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Vium3983g00006 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 371 IPR017930 -
Vium3983g00006 557 Pfam Myb-like DNA-binding domain 318 367 IPR001005 -
Vium3983g00006 557 SUPERFAMILY CheY-like 16 134 IPR011006 -
Vium3983g00006 557 FunFam Two-component response regulator-like APRR2 17 143 - -
Vium3983g00006 557 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 479 IPR044825 GO:0003700|GO:0045893
Vium3983g00006 557 MobiDBLite consensus disorder prediction 223 237 - -
Vium3983g00006 557 NCBIfam myb-like DNA-binding domain, SHAQKYF class 315 369 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3983g00006 Vium-Chr3983 68730 76778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3983g00006 1 464 Response Regulator Gene Family AT4G18020 49.794 6.38e-132 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium3983g00006 Response_reg 3.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3983g00006 - - gmx:100777535 855.514