Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium3983g00006 | ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGAAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCGAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACAATTATGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAACTCAGAAATATCTGGCAGCATGTTGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAACATGAAAGTAGAGTGTCCATTGATATAGAGAAAGTATCCAGGTTTACTGATAATGATGATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGACAATATTGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTACCTAGGGAGGAAGTGAATTTAGTTGACGCTTCCAAGGTTGAGAGTATTGCCTCTCTACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACAAAATCTGCAAATAAAGTAGGCGTTCTTAGTGATTCATGCGAGATAAAGCCAAGACGAAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCAAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATCATGGCCTTTCCTCCATATCATTCTAATCACACCCATACTATGGCTCCTATATATCCTAAGTGGGGACAACCTAGCACTCAAACGGCTGGCATGCATATGTGGAGCACTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGTTTCCAGGGATGCATGCAGATTCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTACTCTAAGAATATGCCTGCGTTGCTCAATGCTGATGCAACAGGTCACACTTTTACCATGCCACAAAGTTCCTTAGAGAATTATCCGGTATGCAACACTTTCGGTTTTTTTGTCTCATGGAAGTGTTCTGCATTTTCTGTTGGCTATTTAGGAGCTGTTTACCATTTGAACAAAATTGAGTCTCCTGGCCAACTGAATCAAGCTTGTGATCTCATGGTTGTGCTGAAGGAATTGGACTTCGATAAGCGGTATTAA | 1674 | 0.4223 | MVFTANDLQEWKDFPKGLKVLLLEEDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQHESRVSIDIEKVSRFTDNDDVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCDNIAETESTPQERKSDMTLPREEVNLVDASKVESIASLHTQKRKVLSNPDKNTKSANKVGVLSDSCEIKPRRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERSYCVQRPIMAFPPYHSNHTHTMAPIYPKWGQPSTQTAGMHMWSTPGYPLWQPTAEHWHWKPFPGMHADSWGCPVLPVPPPQAPFPYSKNMPALLNADATGHTFTMPQSSLENYPVCNTFGFFVSWKCSAFSVGYLGAVYHLNKIESPGQLNQACDLMVVLKELDFDKRY | 557 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium3983g00006 | 557 | MobiDBLite | consensus disorder prediction | 183 | 259 | - | - | |
Vium3983g00006 | 557 | SMART | REC_2 | 18 | 128 | IPR001789 | GO:0000160 | |
Vium3983g00006 | 557 | Gene3D | - | 312 | 373 | - | - | |
Vium3983g00006 | 557 | Gene3D | - | 18 | 139 | - | - | |
Vium3983g00006 | 557 | SUPERFAMILY | Homeodomain-like | 314 | 372 | IPR009057 | - | |
Vium3983g00006 | 557 | ProSiteProfiles | Response regulatory domain profile. | 19 | 132 | IPR001789 | GO:0000160 | |
Vium3983g00006 | 557 | FunFam | Two-component response regulator | 311 | 373 | - | - | |
Vium3983g00006 | 557 | Pfam | Response regulator receiver domain | 20 | 127 | IPR001789 | GO:0000160 | |
Vium3983g00006 | 557 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 312 | 371 | IPR017930 | - | |
Vium3983g00006 | 557 | Pfam | Myb-like DNA-binding domain | 318 | 367 | IPR001005 | - | |
Vium3983g00006 | 557 | SUPERFAMILY | CheY-like | 16 | 134 | IPR011006 | - | |
Vium3983g00006 | 557 | FunFam | Two-component response regulator-like APRR2 | 17 | 143 | - | - | |
Vium3983g00006 | 557 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 1 | 479 | IPR044825 | GO:0003700|GO:0045893 | |
Vium3983g00006 | 557 | MobiDBLite | consensus disorder prediction | 223 | 237 | - | - | |
Vium3983g00006 | 557 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 315 | 369 | IPR006447 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium3983g00006 | Vium-Chr3983 | 68730 | 76778 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium3983g00006 | 1 | 464 | Response Regulator Gene Family | AT4G18020 | 49.794 | 6.38e-132 | 393 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Vium3983g00006 | Response_reg | 3.5e-08 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium3983g00006 | - | - | gmx:100777535 | 855.514 |