Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3979g00002 ATGGCGGATCACTCAGACTCTTCTCCTCTCGTCCCTCCCCTTCCTCTCACTGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACCGATGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTACACCGAGAATGTTTAGATCATTGGCGAGCAGTTAAGGAAGGGTTTGCCTTTGCTCACTGTACAACATGCAAGGCTCCTTACCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGTTTTTTTGTCACCAGAGACATTCTGTTTATTTTTCTGGCTGTCCAGCTTGTCATTGCATCACTGGCATATCTGGTTTATCTAATAGATGGTTACCAGCAATATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTATTTTTCGCACTGCTTGGCCTATCTGGGTGCTTCATTACATGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAACCTTGTAGAGAGTTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTACCGGGCACTCTTTGTATGTGGACTGATTGTACCACTTGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGCTGTTTGGGGGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGGTTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTGGCTACAATGGTAGGTCAGCGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTGGTTGAAGACGTCGATGGAGAGCTGACAGGGTCTGATTGGTCTCCCCCGGCTCTCCCTCCTGAGCATGTTCAGCAGTTGAAAACATTGGGTCTACTGTGA 972 0.4516 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPPEHVQQLKTLGLL 323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium3979g00002 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Vium3979g00002 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Vium3979g00002 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Vium3979g00002 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 322 - -
Vium3979g00002 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Vium3979g00002 323 SUPERFAMILY RING/U-box 29 86 - -
Vium3979g00002 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium3979g00002 Vium-Chr3979 19655 25219 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3979g00002 1 323 C3H Transcription Factor Family AT2G22120 86.420 0.0 567