Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3979g00001 ATGGCGGATCACTCAGACTCTTCTCCTCTCGTCCCTCCCCTTCCTCTCACTGACCCTTCCGAGATCGACCTCGAAGCCGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACCGATGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTACACCGAGAATGTTTAGATCATTGGCGAGCAGTTAAGGAAGGGTTTGCCTTTGCTCACTGTACAACATGCAAGGCTCCTTACCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGTTTTTTTGTCACCAGAGACATTCTGTTTATTTTTCTGGCTGTCCAGCTTGTCATTGCATCACTGGCATATCTGGTTTATCTAATAGATGGTTACCAGCAATATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTATTTTTCGCACTGCTTGGCCTATCTGGGTGCTTCATTACATGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAACCTTGTAGAGAAGTTTGTGCAGACTGTCATTTACCGGGCACTCTTTGTATGTGGACTGATTGTACCACTTGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGCTGTTTGGGGGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGGTTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTGGCTACAATGGTAGGTCAGCGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTGGTTGAAGACGTCGATGGAGAGCTGACAGGGTCTGATTGGTCTCCCCCGGCTCTCCCTCCTGAGCATGTTCAGCAGTTGAAAACATTGGGTCTACTGTGA 945 0.4519 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCREVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPPEHVQQLKTLGLL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3979g00001 314 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Vium3979g00001 314 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Vium3979g00001 314 CDD RING_CH-C4HC3_MARCH 34 82 - -
Vium3979g00001 314 SMART ringv_2 33 82 IPR011016 GO:0008270
Vium3979g00001 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Vium3979g00001 314 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 313 - -
Vium3979g00001 314 SUPERFAMILY RING/U-box 29 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3979g00001 Vium-Chr3979 19650 25219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3979g00001 1 314 C3H Transcription Factor Family AT2G22120 83.642 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3979g00001 - - gmx:100791777 618.231