Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3974g00002 ATGTGCCACAAACATGGTGTGATGCATAGAGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAGTCAGCACCTCTGAAAGCAATTGACTTTGGATTGTCGGTTATCTTCAAACCAGGTGAAAAGTTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAAGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATTTGGAGTGCTGGAGTAATTCTTTACATCTTACTCTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAACAGGGCGTTGCTCAAGCAATTATTCGGTCTGTTGTTGATTTTAGAAGGGAACCATGGCCCAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGCAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTCAGATCAAAGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAACATTTGTCTTCAGAAGAAGCTGCTGGAATAAAAGAGGGATTCGACCTGATGGATACAGGTAATAATGGAAAAATTAACATTGATGAGCTGCGAGAAGGGTTGCAGAAACTAGGTCACCAAATTCCTGACGGAGATGTACATATACTCATGGAAGTTGGTGATTCAGACAAAGATGGGTATCTAGATTATGGAGAGTTTGTTGCCATATCTATTCATCTGAGAAAGATAGACCATGATGAGCACATTCACAAAGCCTTCCAATTTTTTGATAATAATGAAAGTGGATATATTGAAATTGAAGAGTTACATAATGCCTTAGCTGATGAGGTTGAAACAAACATCGACGAAGTCATCAATGCAATTATGCATGATGTTGACACAGATAAGGATGGAAAAATAAGCTATGAGGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTTTCTAGCCTAAGTCAGAAGTTGATCAAGGACGGATCTTTGCAGTTAAACAATGGCGGTAGCGGACTTTAG 1098 0.398 MCHKHGVMHRDLKPENFLFGNKKESAPLKAIDFGLSVIFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFRREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKKAPNVSLGETVRSKLMQFSVMNKLKKRALRVIAEHLSSEEAAGIKEGFDLMDTGNNGKINIDELREGLQKLGHQIPDGDVHILMEVGDSDKDGYLDYGEFVAISIHLRKIDHDEHIHKAFQFFDNNESGYIEIEELHNALADEVETNIDEVINAIMHDVDTDKDGKISYEEFATMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLQLNNGGSGL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3974g00002 365 ProSiteProfiles EF-hand calcium-binding domain profile. 188 223 IPR002048 GO:0005509
Vium3974g00002 365 SUPERFAMILY EF-hand 169 338 IPR011992 -
Vium3974g00002 365 Gene3D - 153 329 - -
Vium3974g00002 365 ProSitePatterns EF-hand calcium-binding domain. 237 249 IPR018247 -
Vium3974g00002 365 ProSiteProfiles EF-hand calcium-binding domain profile. 260 295 IPR002048 GO:0005509
Vium3974g00002 365 SUPERFAMILY Protein kinase-like (PK-like) 2 157 IPR011009 -
Vium3974g00002 365 ProSitePatterns EF-hand calcium-binding domain. 273 285 IPR018247 -
Vium3974g00002 365 FunFam Calcium-dependent protein kinase 7 154 329 - -
Vium3974g00002 365 CDD EFh 264 326 IPR002048 GO:0005509
Vium3974g00002 365 Pfam EF-hand domain pair 205 251 IPR002048 GO:0005509
Vium3974g00002 365 ProSiteProfiles Protein kinase domain profile. 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3974g00002 365 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 321 - -
Vium3974g00002 365 Pfam Protein kinase domain 2 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3974g00002 365 ProSiteProfiles EF-hand calcium-binding domain profile. 296 331 IPR002048 GO:0005509
Vium3974g00002 365 Gene3D Transferase(Phosphotransferase) domain 1 1 152 - -
Vium3974g00002 365 SMART serkin_6 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3974g00002 365 ProSitePatterns EF-hand calcium-binding domain. 309 321 IPR018247 -
Vium3974g00002 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Vium3974g00002 365 FunFam calcium-dependent protein kinase 13 1 153 - -
Vium3974g00002 365 Pfam EF-hand domain pair 263 326 IPR002048 GO:0005509
Vium3974g00002 365 SMART efh_1 192 220 IPR002048 GO:0005509
Vium3974g00002 365 SMART efh_1 264 292 IPR002048 GO:0005509
Vium3974g00002 365 SMART efh_1 228 256 IPR002048 GO:0005509
Vium3974g00002 365 SMART efh_1 300 328 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3974g00002 Vium-Chr3974 1294 4527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3974g00002 1 358 EF-hand Containing Proteins AT5G19450 77.994 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium3974g00002 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3974g00002 K13412 - gmx:100778471 660.988