LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3968g00065	ATGGCTTTCAGCGGTACCCAACAGAAGTGCAAGGCTTGCGATAAAATTGTTCACTTCGTCGAAAGCTTATCTGCCGATGGGATCTCCTATCACAAAAACTGCTTTAGATGCAGCCATTGCAATGGCCTTCTCGCGATAAGCAACTACTGCTCTGGCGATGGAATTTTATACTGCAAGGTGCATTATGAGCAGCTTTTCAAGGAAACTGGCTCCTACCCCAAGAAAGTCCAGTCCTCTCCAAAGCCACCAACCGAGCTTAATAGGACACCAAGCAAAATTTCTGCCTTCTTCTCTGGGACTCAAGAAAAATGCTCAAAATGCAAGAAAACTGTCTATCCGTTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGCGCCCACGGAGGGTGTTTCCTGACTCCTTCAACCTATGCCGCTCTTGATGGCTACCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAAGTGAAATGCTACAAGAGCAAGAGGCTGCGTCTGCGGAGAATAAGAAGACTGATGGTAATCGCTCAGAGTCGGAAGCAGAAACAGAGACAAAACCAGAGACAGAAACAGCAGAGGTAGAAGCAGAGACAGAGGCAGAGACAGAGAAAAACGAAGCCGATGAGGAACCAAACTCTGACAAAGAGTAG	717	0.4658	MAFSGTQQKCKACDKIVHFVESLSADGISYHKNCFRCSHCNGLLAISNYCSGDGILYCKVHYEQLFKETGSYPKKVQSSPKPPTELNRTPSKISAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRSEMLQEQEAASAENKKTDGNRSESEAETETKPETETAEVEAETEAETEKNEADEEPNSDKE	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3968g00065	238	ProSiteProfiles	LIM domain profile.	102	162	IPR001781	-
	Vium3968g00065	238	MobiDBLite	consensus disorder prediction	179	238	-	-
	Vium3968g00065	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	96	129	-	-
	Vium3968g00065	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Vium3968g00065	238	ProSitePatterns	LIM zinc-binding domain signature.	10	44	IPR001781	-
	Vium3968g00065	238	Pfam	LIM domain	10	65	IPR001781	-
	Vium3968g00065	238	Pfam	LIM domain	104	159	IPR001781	-
	Vium3968g00065	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	75	-	-
	Vium3968g00065	238	MobiDBLite	consensus disorder prediction	186	215	-	-
	Vium3968g00065	238	SMART	lim_4	103	155	IPR001781	-
	Vium3968g00065	238	SMART	lim_4	9	61	IPR001781	-
	Vium3968g00065	238	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Vium3968g00065	238	FunFam	LIM domain and actin-binding 1	98	168	-	-
	Vium3968g00065	238	Gene3D	Cysteine Rich Protein	4	74	-	-
	Vium3968g00065	238	Gene3D	Cysteine Rich Protein	98	168	-	-
	Vium3968g00065	238	PANTHER	OS06G0237300 PROTEIN	5	81	-	-
	Vium3968g00065	238	FunFam	LIM domain and actin-binding 1	4	74	-	-
	Vium3968g00065	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	130	168	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3968g00065	Vium-Chr3968	549147	550939	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Vium3968g00065		LIM	2.9e-11	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3968g00065	-		K09377	vun:114179495	408.297