Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00060 ATGTGGGCTTGGATGCTTGGTGAAGGCCGTAGGGCGGTGTGCGAGGTGGCGTGCACCTACAACTGGGTGGCGCTCCGACACATGGGTGGCGGTCCGAGAACCTTTCCGGGCGGCGTGAACAAGTGGAAGTGGAAGCGCATGCACGAGAAACGCGCAGGAGACAAACAAAAGAGACTCATCGAGCAAGAGAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCCGACCACCACTCTGCCGCCGCCGCCACCCATCGCCCTTTATCCCCTAACGACCACGTCAAAGCCCTCGCGGACCGCTTCGTCAAAGAAGGGGCCCAAGATCTCTGGAACACTAACGACGGTCCCCTGACTCCGAACCCGACACCGAACCTAACACCGAACCCAACACCGAACCCAATATCGAACCCAAACCTTAATTTTCGCCCCAAACATTCTAGGGCCTACCGTTCAGTTCCCGAGGTTAGGAACAACCGTGTCGGGGCCCACAAGTATAGGTTTTGGCGGAAAGGTAGTGACGATTCTTCTTCCGGTGAGAGCGAGAGTGAGAATGAGAATGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCTTTGGGGGAGTATGATGTGAAGAGAGAGAAGAGAGTGGTGCCTAAGAAATCTGAAGAAGTTGAGTTTATTAGACATGAACTTATTAAGCGGAAGTTGAGACAGATTGAGGAGCAAGAGATTGAGAAACAACACAGCTATGAAAGTATTCTAAGCAACACAAGATTTGATGAGTGCGGTATATCACCGCAAACTGTCAAGGCACTTTCTTCAGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCTCGATTTGCCTTGAGGGCCTGGATGCTTTAGTCAAATCTAAAACTGGCACAGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAGTACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCGAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTCGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGATCATTTACTCGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTCTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTACGTCGCATATCCCAGCTTGTTTTGAAAAGGGAACACAAGTATGTTGATACAGTTGGAATGGGTTGCGTAGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCGTTGCTCCTCATGAGTCACATTTTCAATTAGTGCATCATATTCTGAAGGAGCATATCTTGCAAACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTGAGGGAGATGCATTCTCGAAAACCTCAGCTCTATCGTACTCGTATATCAGATGAGTTCAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGCCTTGGAAGAACAGGTCGAGAAGACAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAAAGTACTTTTTAGAAGAAATTAAGGATCTACCTTTACAGGAATTTCCCTTACCTGACATACATCCACAGGCAAAACTAAAGATTGAGAATTCGATGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTATTACAACTCTATCAGGGAAATTGGGAGGGAAAAGAGCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGTATTAGAATTCGTAAATAG 2178 0.4545 MWAWMLGEGRRAVCEVACTYNWVALRHMGGGPRTFPGGVNKWKWKRMHEKRAGDKQKRLIEQEKQLYEARIRSHIRSTLSPDHHSAAAATHRPLSPNDHVKALADRFVKEGAQDLWNTNDGPLTPNPTPNLTPNPTPNPISNPNLNFRPKHSRAYRSVPEVRNNRVGAHKYRFWRKGSDDSSSGESESENENELSLKTGSSASLGEYDVKREKRVVPKKSEEVEFIRHELIKRKLRQIEEQEIEKQHSYESILSNTRFDECGISPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSSTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKVKQSYLVAPHESHFQLVHHILKEHILQTPDYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFKESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREDKEGEGILLIAPWEKYFLEEIKDLPLQEFPLPDIHPQAKLKIENSMAKIDNDIKEAAYHAWLGYYNSIREIGREKSTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00060 725 SMART helicmild6 528 609 IPR001650 -
Vium3968g00060 725 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 256 284 IPR014014 GO:0003724
Vium3968g00060 725 MobiDBLite consensus disorder prediction 175 199 - -
Vium3968g00060 725 CDD SF2_C_DEAD 485 618 - -
Vium3968g00060 725 MobiDBLite consensus disorder prediction 126 142 - -
Vium3968g00060 725 Gene3D - 233 472 IPR027417 -
Vium3968g00060 725 MobiDBLite consensus disorder prediction 115 162 - -
Vium3968g00060 725 SMART ultradead3 275 486 IPR014001 -
Vium3968g00060 725 Pfam DEAD/DEAH box helicase 280 458 IPR011545 GO:0003676|GO:0005524
Vium3968g00060 725 Pfam Helicase conserved C-terminal domain 503 607 IPR001650 -
Vium3968g00060 725 MobiDBLite consensus disorder prediction 77 97 - -
Vium3968g00060 725 Gene3D - 480 705 IPR027417 -
Vium3968g00060 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 654 IPR001650 -
Vium3968g00060 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 470 IPR014001 -
Vium3968g00060 725 PANTHER RNA HELICASE 214 654 - -
Vium3968g00060 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00060 Vium-Chr3968 531179 535306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00060 256 634 Eukaryotic Initiation Factors Gene Family AT3G19760 26.768 3.66e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00060 - - vun:114177584 1320.06