Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00052 ATGCCAAAGGCCTTGAGAACACAGATTTTCTCTATTTTCACTCATGCACGATCTGATGGAGCAGCTAACATGGACCCTTATGTGATCCTCACATGTCGCACCCAAGAACAAAAAAGCAGTGTTCAAACAGATAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCATATTCAACGTTTCTGAAGGCGTTAACGAACTGAGATTAAAGATCATGGACAGTGATTCCATGTCTGCAGATGATATCGTGGGAGAAGTTACCATTACGTTGGATGACTTGTTCAAGGCAGGGAGCATTCCATCAACTTCATACAATGTTGTGAAGGATGACCGTTATTGTGGGGAGATTAGAGTTGGCCTCATTTTTAAGCGTCAGGAACGCAGAGAACGCGGTATGGAGGAAGATTTTGGGGGATGGAAGGAGTCTCGTTGCATAGACTAA 438 0.4269 MPKALRTQIFSIFTHARSDGAANMDPYVILTCRTQEQKSSVQTDKGSNPKWNENFIFNVSEGVNELRLKIMDSDSMSADDIVGEVTITLDDLFKAGSIPSTSYNVVKDDRYCGEIRVGLIFKRQERRERGMEEDFGGWKESRCID 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00052 145 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 16 122 IPR035892 -
Vium3968g00052 145 ProSiteProfiles C2 domain profile. 1 102 IPR000008 -
Vium3968g00052 145 SMART C2_3c 9 101 IPR000008 -
Vium3968g00052 145 PANTHER C2 DOMAIN-CONTAINING 21 125 - -
Vium3968g00052 145 Pfam C2 domain 17 95 IPR000008 -
Vium3968g00052 145 Gene3D C2 domain 4 123 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00052 Vium-Chr3968 495420 497044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00052 25 125 C2H2 Transcription Factor Family AT4G21160 32.673 5.79e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00052 - - gmx:100782974 177.178