Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00051 ATGCCTCAGGGAACCCTTGAAGTTTTTCTTGAATATGCCAAAGGCCTTGAGAACACAGATTTTCTCTCTAACATGGACCCTTATGTGATCCTCACATGTCGCACCCAAGAACAAAAAAGCAGTGTTCAAACAGATAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCATATTCAACGTTTCTGAAGGCGTTAACGAACTGAGATTAAAGATCATGGACAGTGATTCCATGTCTGCAGATGATATCGTGGGAGAAGTTACCATTACGTTGGATGACTTGTTCAAGGCAGGGAGCATTCCATCAACTTCATACAATGTTGTGAAGGATGACCGTTATTGTGGGGAGATTAGAGTTGGCCTCATTTTTAAGCGTCAGGAACGCAGAGAACGCGGTATGGAGGAAGATTTTGGGGGATGGAAGGAGTCTCGTTGCATAGACTAA 441 0.424 MPQGTLEVFLEYAKGLENTDFLSNMDPYVILTCRTQEQKSSVQTDKGSNPKWNENFIFNVSEGVNELRLKIMDSDSMSADDIVGEVTITLDDLFKAGSIPSTSYNVVKDDRYCGEIRVGLIFKRQERRERGMEEDFGGWKESRCID 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00051 146 Pfam C2 domain 4 96 IPR000008 -
Vium3968g00051 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vium3968g00051 146 SMART C2_3c 5 102 IPR000008 -
Vium3968g00051 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 123 IPR035892 -
Vium3968g00051 146 Gene3D C2 domain 2 124 IPR035892 -
Vium3968g00051 146 PANTHER C2 DOMAIN-CONTAINING 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00051 Vium-Chr3968 495395 497044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00051 4 126 C2H2 Transcription Factor Family AT4G21160 30.894 4.33e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00051 - - gmx:100782974 209.534