Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00044 ATGGACTGGAATCTGAAAGCAGCTTCTTGGGATTTGAGTGAAGTGAATCAGGCAAACTTACCCAACATGGAAACAGTGGAAGGCTCAAGCAGATATGGAATGTTTACAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACCAAGTCCAAAGATGCTGTAGGACTCTCCAAAATCTCATCCTCATCTTCATCTTCTGGCTCATCTAAGAGAGCTCGTGCCCTTGGCAACGCCACACAGACAGTCTCGTGTCTTGTCGATGGCTGCCACTCTGATCTCAGTAACTGCAGGGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGATTAGATGGGCACAACAGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACACGTATACCCATCGACTACCGTGATGAATCCGACATGGGGTGGAATTGTTGCTTCTGGTGATGTTAGGATTCATGGACACAACCAACAGGGTGAGCTTTTTCTTGGGACTTCTCCAACCGCTTATAAAGAAGGGAAACAGTTGGCCTTCCTGCAAGGTGACCACACTCTCAACAACCAAAGCCCACATCTCGCGGGTGCTTCCGTGGGCCAGGCCCATATGTTTCTGAGGACCGGCCCGTATTCTGAAAGTAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACGAGCTCGGTCCACGACTCCTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAAATAGTGAACCCGCATTCGCCCCTTATGCAGCAATTGGGCCTCAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCTCTCCAGTGTTTCCCTTTCAATGGGGATAG 1152 0.5009 MDWNLKAASWDLSEVNQANLPNMETVEGSSRYGMFTSKGEFSVDLKLGQVGNSGTESVLTKSKDAVGLSKISSSSSSSGSSKRARALGNATQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDVRIHGHNQQGELFLGTSPTAYKEGKQLAFLQGDHTLNNQSPHLAGASVGQAHMFLRTGPYSESSGLRCKMLCDSLTSSVHDSSSRALSLLSSPQPHSPGNGLSQIVNPHSPLMQQLGLSLHDGNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEASPVFPFQWG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00044 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 374 IPR044817 GO:0003677
Vium3968g00044 383 Pfam SBP domain 96 169 IPR004333 GO:0003677
Vium3968g00044 383 MobiDBLite consensus disorder prediction 159 181 - -
Vium3968g00044 383 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Vium3968g00044 383 MobiDBLite consensus disorder prediction 303 324 - -
Vium3968g00044 383 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
Vium3968g00044 383 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Vium3968g00044 383 Gene3D - 87 157 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00044 Vium-Chr3968 447093 450669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00044 1 299 SBP-box Gene Family AT5G50670 48.232 4.82e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium3968g00044 SBP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00044 - - gmx:100806507 622.468