Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00038 ATGGACAAGATCAAGTGCTGTTCATCTTCTCCTTCTCCTTCTTACTTTAAACTCCCTCGTCATCTTCATCATCAGGTTCGAGAACAAATGAAGCACCGCAGATTTGCATTTCAAACAAGGAGTCAGGTTGATATACTCGATGATGGATATCGCTGGAGAAAGTATGGCGAAAAGTCTGTCAAAAACAATAAATTTCCTAGAAGCTACTACAGATGTTCTTATCGAGGTTGCAACGTGAAGAAACAAATCCAACGACATAGCAAAGACGAAGAGATTGTGGTAACAACCTACGAAGGGACACATTCTCATCCTGTGGAAAAGACAAGTGAAAGTTTCGAGCAGATACTCAGAAACCATCACATATATAGCCTCACTCTTTAA 381 0.4016 MDKIKCCSSSPSPSYFKLPRHLHHQVREQMKHRRFAFQTRSQVDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSKDEEIVVTTYEGTHSHPVEKTSESFEQILRNHHIYSLTL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00038 126 SMART WRKY_cls 46 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3968g00038 126 Gene3D WRKY domain 33 99 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium3968g00038 126 ProSiteProfiles WRKY domain profile. 41 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3968g00038 126 FunFam WRKY transcription factor 57 32 106 - -
Vium3968g00038 126 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 109 IPR044810 GO:0003700
Vium3968g00038 126 Pfam WRKY DNA -binding domain 47 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium3968g00038 126 SUPERFAMILY WRKY DNA-binding domain 38 105 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00038 Vium-Chr3968 419625 420379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00038 33 123 WRKY Transcription Factor Family AT5G13080 75.824 9.67e-51 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium3968g00038 WRKY 9.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00038 - - gmx:100127378 193.356