Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00033 ATGTCAGAATCTCGGGCCCCTAAGCGCCCCAAAATAACTAGGGGGGACGATGATTATATGCCGGGAAATATTCTTGAGATCGAGCTTTGTAATTTCATGACGTTTGACTATTTAAAATGCAAACCTGGGCCTCGACTGAATCTTGTAATTGGACCCAATGGCTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTGTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACAAGTATTGGGGCATATGTGAAGCGTGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGCGGACCATAGAAATGAACACATTAGCGTTATGCGGAAAATTAGTACTAATAACAAGTCTGAATGGTTGCTCAATGGAAGTGTGGTGTCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACCCAGTTCTTACCACAAGACAGGGTCTGTGAGTTTGCCAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAACTCCCAGAGCAACATCGAACACTAGTTGATAAAAGCCGTTCATTGAAACATATTGAGTTGTCTCTGGAGAGAAATGAAGGAACCTTAAAACAGTTGAAGGAACGAAATGCTGAATTAGAGACAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAGTTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATACCGGGAAGTTAAGGAGCGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTGCAAAGTTATTAAATGATCTTAAAGAACCTATCATGAAACAAAAAGAAGAGAAAGCTTCATTAGATGCAAAATGCAAAAGGGTTAGTCGCATTGTAAATGAGAATGCAAAGAAGAGAATTGAGCTTATGGAGGAGGAGCACAAATTGGATGTGGAATTACAAGGAAAATACAAAGAAATGGAAGAATTGAGGAGACAAGAAGAAACACGACAACAAAAACTTGTAAAAGCAAGGGAGGAACTTGCTATAGCTGAACATGAACTTGAGAACTTACCCTCTTATGTACCTCCCAAGGATGAGCTTCAAAGACTAAAAGCCGAAATCGGTGAATTGGATTATGCTGCTAATCAAGTGAGGCAGAATAAGTCACAAGCAGAGAATGAAATAAAGCGCAAGAAGTCATTCATGATGCAGAACAAAGAGAGGTTGATGGAAATGGATAATAAAAGTACGAAGTGTTTGCATGTATTGCAAAGGTCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCAACATGAATTCAATAAGGAGGTTTATGGCCCAGTCTTAGTAGAGGTGAATGTATCAAATAAAGTTCATGCCGCATATCTAGAGGGTCAAGTGGCTCACTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCTTTTGGTGAAGCACCTGCAGTTCTTTGATGTACCAGTTTTAAATTATACAGGTGATGGTGGCCACCAAAGAGAGCCTTTTGAAATTTCCGAAGATAAACGTGCTCTTGGCATATACTCTCGGCTGGATCAAATTTTTGAGGCTCCTATTGCCGTAAAGGAGTATATCGGATCCAAAGAAACTGATCAGAACGCTGATGAGGTGCCAAGATTAGGAATTGTAAATTTGTGGACACCTGAAAATCACTACCGTTGGTCCAAGTCTAGATATGTAAATCATGTCTCTACAGTCGTTGAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAAAAGCTGCGTTCTCAGCAAAAGGAGCTTGAAGAAGTCGTTGCTAATTTGGAGGAATGTGTTAAAAAGTTTCAAGATGAAGAAAGAAGCTTAGTGAATCAAGCTGCTAATTTTCGTAAGGAGTGGGAAGGCATTAGTATTACAGTACAGAATGAGCGTAAAAAACGTCAAACACTCATCAGCCGTATTGATCAGAGGAAAGGGTTATTAAAAGTGATGGAGGAACGGGATGATTTAGATACTGAGATAGCAAAGCTTGTTCATCAGGCTTCCAGGTATAATATTCAGCGTTTCCGTAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGAACCTTTATTGAACAACGTATGGCTTTTATTGAGTTTGATGCAAAGACTGGAGAAATGGATGCCAACCTGAAGCAGCATGAGAGTTTTGCTGTGCAAGCATCATTGCACTTCGAAAACTGTAAGAAAGAATCCGAGAACTGTAGACAGAAGCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCAGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTAGAGGCAGCTATCCAGGATACCACTGCTCAAGCCAATTCAATTCTCTTCGTCAATCATAACATATTGGAACAATATAAAGATCGTCAACGGCAGATCGAAGATCTTGCAGCAAAACTGGAAGCAGACAGAAAGGAATCTACACGGTGTTTGGCTGAGTTAAATGACATTAAGGGAAAATGGCTTCCTACATTGAGAAACCTAGTAGCAAAAATAAATGAAACCTTCAGTTTCAATTTCCAAGAGATGGCCGTTGCTGGAGAAGTTTCGCTAGATGAGCATGATATAGATTTTGATCAATTTGGAATACTGATAAAAGTTAAATTCAGAGAAACTGGACAGCTTAAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTGACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACCCCCCAGTGTTTCTTACTTACCCCAAAATTGTTACCAGATCTGCAATATAGTGAGGCATGTAGTATATTGAATGTGATGAATGGCCCTTGGATTGAAGAACCCTCGAAGGTCTGGACTACTGGTGATCGGTGGAGTATTATCACTGGACTCGTTGGAAACACACTTTGCTGA 3126 0.404 MSESRAPKRPKITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRADHRNEHISVMRKISTNNKSEWLLNGSVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRTLVDKSRSLKHIELSLERNEGTLKQLKERNAELETDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREVKERENDAAKALEEAAKLLNDLKEPIMKQKEEKASLDAKCKRVSRIVNENAKKRIELMEEEHKLDVELQGKYKEMEELRRQEETRQQKLVKAREELAIAEHELENLPSYVPPKDELQRLKAEIGELDYAANQVRQNKSQAENEIKRKKSFMMQNKERLMEMDNKSTKCLHVLQRSGAEKIFEAYKWVQEHQHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDVPVLNYTGDGGHQREPFEISEDKRALGIYSRLDQIFEAPIAVKEYIGSKETDQNADEVPRLGIVNLWTPENHYRWSKSRYVNHVSTVVEQVERPQLLLNNLNVGEIEKLRSQQKELEEVVANLEECVKKFQDEERSLVNQAANFRKEWEGISITVQNERKKRQTLISRIDQRKGLLKVMEERDDLDTEIAKLVHQASRYNIQRFRNAMEIKDLLVEAVSYRRTFIEQRMAFIEFDAKTGEMDANLKQHESFAVQASLHFENCKKESENCRQKLTDSLKYAKSIAQLTPELKKEFLEMPTTIEELEAAIQDTTAQANSILFVNHNILEQYKDRQRQIEDLAAKLEADRKESTRCLAELNDIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDEHDIDFDQFGILIKVKFRETGQLKVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEEPSKVWTTGDRWSIITGLVGNTLC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00033 1041 Coils Coil 610 651 - -
Vium3968g00033 1041 Coils Coil 830 853 - -
Vium3968g00033 1041 Pfam RecF/RecN/SMC N terminal domain 25 982 IPR003395 -
Vium3968g00033 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 992 IPR027417 -
Vium3968g00033 1041 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1033 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vium3968g00033 1041 Coils Coil 194 228 - -
Vium3968g00033 1041 Coils Coil 372 399 - -
Vium3968g00033 1041 Coils Coil 251 278 - -
Vium3968g00033 1041 Coils Coil 328 358 - -
Vium3968g00033 1041 FunFam Structural maintenance of chromosomes 5 837 1008 - -
Vium3968g00033 1041 Gene3D - 23 218 IPR027417 -
Vium3968g00033 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 286 IPR027417 -
Vium3968g00033 1041 Gene3D - 833 1010 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00033 Vium-Chr3968 333395 362830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00033 1 1030 Structural Maintenance of Chromosomes family AT5G15920 61.575 0.0 1284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00033 K22803 - gmx:100778678 1812.35