Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3968g00032 ATGTCAGAATCTCGGGCCCCTAAGCGCCCCAAAATAACTAGGGGGGACGATGATTATATGCCGGGAAATATTCTTGAGATCGAGCTTTGTAATTTCATGACGTTTGACTATTTAAAATGCAAACCTGGGCCTCGACTGAATCTTGTAATTGGACCCAATGGCTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTGTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACAAGTATTGGGGCATATGTGAAGCGTGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGCGGACCATAGAAATGAACACATTAGCGTTATGCGGAAAATTAGTACTAATAACAAGTCTGAATGGTTGCTCAATGGAAGTGTGGTGTCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACCCAGTTCTTACCACAAGACAGGGTCTGTGAGTTTGCCAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAACTCCCAGAGCAACATCGAACACTAGTTGATAAAAGCCGTTCATTGAAACATATTGAGTTGTCTCTGGAGAGAAATGAAGGAACCTTAAAACAGTTGAAGGAACGAAATGCTGAATTAGAGACAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAGTTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATACCGGGAAGTTAAGGAGCGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTGCAAAGTTATTAAATGATCTTAAAGAACCTATCATGAAACAAAAAGAAGAGAAAGCTTCATTAGATGCAAAATGCAAAAGGGTTAGTCGCATTGTAAATGAGAATGCAAAGAAGAGAATTGAGCTTATGGAGGAGGAGCACAAATTGGATGTGGAATTACAAGGAAAATACAAAGAAATGGAAGAATTGAGGAGACAAGAAGAAACACGACAACAAAAACTTGTAAAAGCAAGGGAGGAACTTGCTATAGCTGAACATGAACTTGAGAACTTACCCTCTTATGTACCTCCCAAGGATGAGCTTCAAAGACTAAAAGCCGAAATCGGTGAATTGGATTATGCTGCTAATCAAGTGAGGCAGAATAAGTCACAAGCAGAGAATGAAATAAAGCGCAAGAAGTCATTCATGATGCAGAACAAAGAGAGGTTGATGGAAATGGATAATAAAAGTACGAAGTGTTTGCATGTATTGCAAAGGTCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCAACATGAATTCAATAAGGAGGTTTATGGCCCAGTCTTAGTAGAGGTGAATGTATCAAATAAAGTTCATGCCGCATATCTAGAGGGTCAAGTGGCTCACTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCTTTTGGTGAAGCACCTGCAGTTCTTTGATGTACCAGTTTTAAATTATACAGGTGATGGTGGCCACCAAAGAGAGCCTTTTGAAATTTCCGAAGATAAACGTGCTCTTGGCATATACTCTCGGCTGGATCAAATTTTTGAGGCTCCTATTGCCGTAAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATCATTCATATATCGGATCCAAAGAAACTGATCAGAACGCTGATGAGGTGCCAAGATTAGGAATTGTAAATTTGTGGACACCTGAAAATCACTACCGTTGGTCCAAGTCTAGATATGTAAATCATGTCTCTACAGTCGTTGAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAAAAGCTGCGTTCTCAGCAAAAGGAGCTTGAAGAAGTCGTTGCTAATTTGGAGGAATGTGTTAAAAAGTTTCAAGATGAAGAAAGAAGCTTAGTGAATCAAGCTGCTAATTTTCGTAAGGAGTGGGAAGGCATTAGTATTACAGTACAGAATGAGCGTAAAAAACGTCAAACACTCATCAGCCGTATTGATCAGAGGAAAGGGTTATTAAAAGTGATGGAGGAACGGGATGATTTAGATACTGAGATAGCAAAGCTTGTTCATCAGGCTTCCAGGTATAATATTCAGCGTTTCCGTAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGAACCTTTATTGAACAACGTATGGCTTTTATTGAGTTTGATGCAAAGACTGGAGAAATGGATGCCAACCTGAAGCAGCATGAGAGTTTTGCTGTGCAAGCATCATTGCACTTCGAAAACTGTAAGAAAGAATCCGAGAACTGTAGACAGAAGCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCAGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTAGAGGCAGCTATCCAGGATACCACTGCTCAAGCCAATTCAATTCTCTTCGTCAATCATAACATATTGGAACAATATAAAGATCGTCAACGGCAGATCGAAGATCTTGCAGCAAAACTGGAAGCAGACAGAAAGGAATCTACACGGTGTTTGGCTGAGTTAAATGACATTAAGGGAAAATGGCTTCCTACATTGAGAAACCTAGTAGCAAAAATAAATGAAACCTTCAGTTTCAATTTCCAAGAGATGGCCGTTGCTGGAGAAGTTTCGCTAGATGAGCATGATATAGATTTTGATCAATTTGGAATACTGATAAAAGTTAAATTCAGAGAAACTGGACAGCTTAAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTGACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACCCCCCAGTGTTTCTTACTTACCCCAAAATTGTTACCAGATCTGCAATATAGTGAGGCATGTAGTATATTGAATGTGATGAATGGCCCTTGGATTGAAGAACCCTCGAAGGTCTGGACTACTGGTGATCGGTGGAGTATTATCACTGGACTCGTTGGAAACACACTTTGCTGA 3159 0.403 MSESRAPKRPKITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRADHRNEHISVMRKISTNNKSEWLLNGSVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRTLVDKSRSLKHIELSLERNEGTLKQLKERNAELETDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREVKERENDAAKALEEAAKLLNDLKEPIMKQKEEKASLDAKCKRVSRIVNENAKKRIELMEEEHKLDVELQGKYKEMEELRRQEETRQQKLVKAREELAIAEHELENLPSYVPPKDELQRLKAEIGELDYAANQVRQNKSQAENEIKRKKSFMMQNKERLMEMDNKSTKCLHVLQRSGAEKIFEAYKWVQEHQHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDLLVKHLQFFDVPVLNYTGDGGHQREPFEISEDKRALGIYSRLDQIFEAPIAVKEVLISQFNLDHSYIGSKETDQNADEVPRLGIVNLWTPENHYRWSKSRYVNHVSTVVEQVERPQLLLNNLNVGEIEKLRSQQKELEEVVANLEECVKKFQDEERSLVNQAANFRKEWEGISITVQNERKKRQTLISRIDQRKGLLKVMEERDDLDTEIAKLVHQASRYNIQRFRNAMEIKDLLVEAVSYRRTFIEQRMAFIEFDAKTGEMDANLKQHESFAVQASLHFENCKKESENCRQKLTDSLKYAKSIAQLTPELKKEFLEMPTTIEELEAAIQDTTAQANSILFVNHNILEQYKDRQRQIEDLAAKLEADRKESTRCLAELNDIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDEHDIDFDQFGILIKVKFRETGQLKVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEEPSKVWTTGDRWSIITGLVGNTLC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3968g00032 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1044 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vium3968g00032 1052 Coils Coil 841 864 - -
Vium3968g00032 1052 Gene3D - 844 1021 IPR027417 -
Vium3968g00032 1052 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Vium3968g00032 1052 Coils Coil 194 228 - -
Vium3968g00032 1052 Coils Coil 372 399 - -
Vium3968g00032 1052 FunFam Structural maintenance of chromosomes 5 848 1019 - -
Vium3968g00032 1052 Gene3D - 23 211 IPR027417 -
Vium3968g00032 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1003 IPR027417 -
Vium3968g00032 1052 Coils Coil 251 278 - -
Vium3968g00032 1052 Coils Coil 328 358 - -
Vium3968g00032 1052 Coils Coil 621 662 - -
Vium3968g00032 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3968g00032 Vium-Chr3968 333395 362830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3968g00032 1 1041 Structural Maintenance of Chromosomes family AT5G15920 62.248 0.0 1304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3968g00032 K22803 - gmx:100778678 1839.7